View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10346_low_16 (Length: 417)
Name: NF10346_low_16
Description: NF10346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10346_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 18 - 407
Target Start/End: Complemental strand, 4368354 - 4367930
Alignment:
| Q |
18 |
ccttgctcaagaaaccagatgtaattactcatttcaatacaatactgtttcaattct--------------atcctcagtaaaatagtaaacaatggctt |
103 |
Q |
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| T |
4368354 |
ccttgctcaagaaaccagatgtaattactcatttcaatacaatactgtttcaattcttactttttttttttatcctcagtaaaatagtaaacaatggctt |
4368255 |
T |
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| Q |
104 |
agtgcattttcggattgactgttgaaaccggtgaaatcatggcaggttactgtgattctgt---------------------agacaagttatatccaac |
182 |
Q |
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| T |
4368254 |
agtgcattttcggattgactgttgaaaccggtgaaatcatggcaggttactgtgattctgtcaaattcttgtgtgattctgtagacaagttatatccaac |
4368155 |
T |
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| Q |
183 |
aatatgctgtaggtgtttgttgttatttgataatgatgatggtatgtgcaggttaatatcataaaataatatgaaccataataattgatcacgttggata |
282 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4368154 |
aatatgctgtaggtgtttgttgttatttgataatgatgatggtatgtgctggttaatatcataaaataatatgaaccataataattgatcacgttggata |
4368055 |
T |
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| Q |
283 |
caactatataattaaagaatacatctaacataacagctgagtttgattgctctttatatttattattattgtttaataaactttatgccagtggggtttg |
382 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4368054 |
caactatataattaaagaatacatctaacataacagctgagtttgattgctctttatatttattattattgtttaataaactttatgccagtggggtttg |
4367955 |
T |
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| Q |
383 |
aagccagctttgatgtggtcctatg |
407 |
Q |
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| T |
4367954 |
aagccagctttgatgtggtcctatg |
4367930 |
T |
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