View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10346_low_17 (Length: 415)
Name: NF10346_low_17
Description: NF10346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10346_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 20 - 401
Target Start/End: Original strand, 48798672 - 48799053
Alignment:
| Q |
20 |
agcaaaacaccaaggatgggaacggtttggatgtatggcttggccgggtagccatggttggttttgcagtagccattactgttgaaattacttcaggaaa |
119 |
Q |
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| T |
48798672 |
agcaaaacaccaaggatgggaatggtttggatgtatggcttggccgggtagccatggttggttttgcagtagccattactgttgaaattacttcaggaaa |
48798771 |
T |
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| Q |
120 |
aggactcctagaggtatatttgcacaccataacgtaaactttgagttactttatgcatgacttagactgcaatcacttgtcttcaatcttttaagtcatg |
219 |
Q |
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| T |
48798772 |
aggactcctagaggtatatttgcacaccataacgtaaactttgagttactttatgcatgacttagactgcaatcacttgtcttcaatcttttaagtcatg |
48798871 |
T |
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| Q |
220 |
aaacaaattataatttccatcaaatgattgataattggcttatatgtttttctttctatcacccctatttgtcaaaactcaaatgtttgctttgatattt |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48798872 |
aaacaaattataatttccatcaaatgattgataattggcttatatgtttttctttctatcacccctatttgtcaaaactcaaatgtttgctttgatattt |
48798971 |
T |
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| Q |
320 |
tagctgcaatatggtaatcttcctttctcctttactttatagtgtgtatggtatctagttgtaaaattaagctatgtctctg |
401 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
48798972 |
tagctgcaatatggtaatcttcctttctcctttactttatagtgtgtatggtatctagttgtaaaattaagctatgtgtctg |
48799053 |
T |
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