View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10346_low_18 (Length: 413)
Name: NF10346_low_18
Description: NF10346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10346_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 14 - 391
Target Start/End: Complemental strand, 39795291 - 39794909
Alignment:
| Q |
14 |
gatgataatgtgttatcccatatcctatgaatgaaaaaagataaaagagagatattagagaaaatgtgaaacatctttctctaaacaaaattagaaccgg |
113 |
Q |
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| T |
39795291 |
gatgataatgtgttatcccatatcctatgaatgaaaaaagataaaagagagaaattagagaaaatgtgaaacatctttctctaaacaaaattagaaccgg |
39795192 |
T |
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| Q |
114 |
ctgcaaattttacgctattcgtgaggtgagaaatgaaatcgattcttttacaaactaaat-aataaaccccnnnnnnn-aaatatgtaggatttttcttt |
211 |
Q |
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| T |
39795191 |
ctgcaaattttaggctattcgtgaggtaagaaatgaaatcgattcttttacaaactaaattaataaaccccttttttttaaatatgtaggatttttcttt |
39795092 |
T |
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| Q |
212 |
tgacaaaaaatatgtagggaatttttacgttcctttcaatttgagggcaagaaataataata---tatgtagtactttaaaatagatgataatgcttaac |
308 |
Q |
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| T |
39795091 |
tgacaaaaaatatgtaggaaatttttacgttcctttcaatttgagggcaagaaataataataatatatgtagtactttaaaatagatgataatgcttaac |
39794992 |
T |
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| Q |
309 |
taatctttaaaagaagaaatgataatgtttaattattgtggggtaatatggttttgtctacattaatacgaataggaaaagag |
391 |
Q |
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| T |
39794991 |
taatctttaaaagaagaaatgataatgcttaattattgtggggtaatatggttttgtcaacattaatacgaataggaaaagag |
39794909 |
T |
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