View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10346_low_19 (Length: 409)
Name: NF10346_low_19
Description: NF10346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10346_low_19 |
 | |
|
| [»] chr5 (4 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 322; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 19 - 409
Target Start/End: Complemental strand, 31382496 - 31382110
Alignment:
| Q |
19 |
acctcaaagattacaaaacttcttcacaatactttatgatatatagcccaaagaaggatcctcgtagcatttggactttgcttccaaatttctctccaat |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
31382496 |
acctcaaagattacaaaacttcttcacaatactttctgatatatagcctaaagaaggatcctcgtagcatttggactttgcttccaaattgctctccaat |
31382397 |
T |
|
| Q |
119 |
gtatccataatcctacaaatctttgaagaaagtgaggaatcgtaaaagacttgctctaatgtttgctgggttcggaaaactacacggaggtagttcatca |
218 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||| |||| |
|
|
| T |
31382396 |
gtatccataatcctacgaatctttgaagaaagtgaggaatcgtaaaagacttgctctaatgtttgctcggttcggcaaactacacagaggta----atca |
31382301 |
T |
|
| Q |
219 |
catgttgggtaagcgggtgaagaccaccaccaaaatttgtaaccttcgtcagatctcgaccaatcaaatactccaactccttaaatatgtctctaattgt |
318 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
31382300 |
catgttgggtaattgggtgaagaccaccaccaaaatttgtaaccttcgtcagatctcgacaaatcaaatactccaactctttaaatatgtctctaattgt |
31382201 |
T |
|
| Q |
319 |
tttccccagtctattccatattgcagttgcttcactccttagagatagattgtactgatcacaaaataaggatgccaattcttgaatcagg |
409 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
31382200 |
tttccccagtctattccatatcgcagttgcttcactccttagagatagattgtactgatcacaaaataaggatgccaattctggaatcagg |
31382110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 57 - 407
Target Start/End: Complemental strand, 31318938 - 31318588
Alignment:
| Q |
57 |
atatatagcccaaagaaggatcctcgtagcatttggactttgcttccaaatttctctccaatgtatccataatcctacaaatctttgaagaaagtgagga |
156 |
Q |
| |
|
|||||||||| |||||||||||| |||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| |||||||||||||| |
|
|
| T |
31318938 |
atatatagcctaaagaaggatccacgtagcatttggactttgcttccaaattgctctccaatgtatcgataatcctatgaatcttcgaagaaagtgagga |
31318839 |
T |
|
| Q |
157 |
atcgtaaaagacttgctctaatgtttgctgggttcggaaaactacacggaggtagttcatcacatgttgggtaagcgggtgaagaccaccaccaaaattt |
256 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |||||||||| ||| |||||||| |||||||||||| |
|
|
| T |
31318838 |
atcgtagaagacttgctctaatgtttgctgggatcggcaaactacacggaggtagttcatcacgtgttgggtaatcggttgaagaccgccaccaaaattt |
31318739 |
T |
|
| Q |
257 |
gtaaccttcgtcagatctcgaccaatcaaatactccaactccttaaatatgtctctaattgttttccccagtctattccatattgcagttgcttcactcc |
356 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||| |||||||||||| ||| |
|
|
| T |
31318738 |
atcaccttcgtcagatctcgaccaatcaaatactccaactccttaaatatgtccctaattgttttccccaatctcttccatatagcagttgcttcattcc |
31318639 |
T |
|
| Q |
357 |
ttagagatagattgtactgatcacaaaataaggatgccaattcttgaatca |
407 |
Q |
| |
|
||||||| | | ||||||||||||||||||||||||| |||||| |||||| |
|
|
| T |
31318638 |
ttagagacatactgtactgatcacaaaataaggatgcaaattctggaatca |
31318588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 261 - 407
Target Start/End: Complemental strand, 31369843 - 31369698
Alignment:
| Q |
261 |
ccttcgtcagatctcgaccaatcaaatactccaactccttaaatatgtctctaattgttttccccagtctattccatattgcagttgcttcactccttag |
360 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||| | |||||||||| ||||||| |
|
|
| T |
31369843 |
ccttcgtcagatcttgaccaatcaaatactccaactccttaaatatgtccctaattgttttcccc-gtctcttccatatagtagttgcttcattccttag |
31369745 |
T |
|
| Q |
361 |
agatagattgtactgatcacaaaataaggatgccaattcttgaatca |
407 |
Q |
| |
|
||| | | ||||||||||||||||||||||||| |||||| |||||| |
|
|
| T |
31369744 |
agacataatgtactgatcacaaaataaggatgcaaattctggaatca |
31369698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 22 - 59
Target Start/End: Complemental strand, 31373054 - 31373017
Alignment:
| Q |
22 |
tcaaagattacaaaacttcttcacaatactttatgata |
59 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
31373054 |
tcaaagattacaaaacttcttcaaaatactttatgata |
31373017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University