View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10346_low_2 (Length: 768)
Name: NF10346_low_2
Description: NF10346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10346_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 238 - 532
Target Start/End: Original strand, 34525720 - 34526013
Alignment:
| Q |
238 |
actcacttagtgtgccacaataaatttatatatgttgaacccaaacatcataaaatattgtcaaatcacgttcaaagacattaaacacacgaatagagac |
337 |
Q |
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| T |
34525720 |
actcacttaatgtgccacaataaatttatatatgttgaacccaaacatcataaaatatcgtcaaatcacgttcaaagacattaaacacacgaatagagac |
34525819 |
T |
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| Q |
338 |
ggttaagaatatcgtcaacgtgaatccaaacactacattaatcacaaaaaagtcaagaatattgaatcaaccaattaactagtgtctttgtcggaaaata |
437 |
Q |
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| T |
34525820 |
ggtcaagaatatcgtcaacgtgaatccaaacactacattgatcacaaaaaagtcaagaatattgaatcaaccaattaactagtgtctttgtcggaaaata |
34525919 |
T |
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| Q |
438 |
tagagggtaatataaagttgcacatttccataactgcctttgtgacagaatcttgaaataatttttgtaacataaaacattattctaggtagtac |
532 |
Q |
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| T |
34525920 |
tcgagggtaatatatagttgcacatttccataactg-ctttgtgacagaatcttgaaataatttttgtaacataaaacattattccaggtagtac |
34526013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 182; E-Value: 5e-98
Query Start/End: Original strand, 560 - 753
Target Start/End: Original strand, 34526016 - 34526209
Alignment:
| Q |
560 |
ggatatgggtagtgttatagtgtattaaggttcatatcattaccgcaaaacttcaatttcaacctatgacaaaatcctactactacatcttactttaaca |
659 |
Q |
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| T |
34526016 |
ggatatgggtagtgttatagtgtattaaggttcatatcattaccgcaaaatttcaatttcaacctatgacaaaatcctactgctacatcttactttaaca |
34526115 |
T |
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| Q |
660 |
aaccagaccatgaaaccaaacaactaagactctgttgagcttatagcttataagatcatgcgacaaaaaagacctgtttgataacattttttct |
753 |
Q |
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| T |
34526116 |
aaccagaccatgaaaccaaacaactaacactctgttgagcttatagcttataagatcatgcgacaaaaaagacctgtttgataacattttttct |
34526209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 17 - 102
Target Start/End: Original strand, 34525465 - 34525552
Alignment:
| Q |
17 |
agaagtttagaattgaagaaacaattttgaacatcaattgtcaaa--atatgttataaaaagagttatcaactatgaaatacaaaact |
102 |
Q |
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| T |
34525465 |
agaagtttagaattgaagaaacaattttgaacatcaattgtcaaaatatatgttataaaaagagttatcaactatgaaatacaaaact |
34525552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 12 - 100
Target Start/End: Original strand, 34521843 - 34521933
Alignment:
| Q |
12 |
tcatcagaagtttagaattgaagaaacaattttgaacatcaattgtcaaaata--tgttataaaaagagttatcaactatgaaatacaaaa |
100 |
Q |
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| T |
34521843 |
tcattagaaatttagaattgaagatacaattttgaacaacaattgtcaaaatatctggtttaaaaagagttatcaactatgaaatacaaaa |
34521933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 694 - 741
Target Start/End: Original strand, 31677101 - 31677148
Alignment:
| Q |
694 |
ttgagcttatagcttataagatcatgcgacaaaaaagacctgtttgat |
741 |
Q |
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| T |
31677101 |
ttgagcttatagcttataagctaatttgacaaaaaagacctgtttgat |
31677148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 278 - 315
Target Start/End: Complemental strand, 44222521 - 44222484
Alignment:
| Q |
278 |
ccaaacatcataaaatattgtcaaatcacgttcaaaga |
315 |
Q |
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| T |
44222521 |
ccaaacatcataaaatattttcaaatcatgttcaaaga |
44222484 |
T |
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