View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10346_low_20 (Length: 388)
Name: NF10346_low_20
Description: NF10346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10346_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 313; Significance: 1e-176; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 380
Target Start/End: Complemental strand, 31382109 - 31381728
Alignment:
| Q |
1 |
tcacataatgtttcaaaaacctcgaggattttaaacaaacgctctggtgagtgaattccaatagagtgactagacacataatcaacaaaatttagaagtt |
100 |
Q |
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| T |
31382109 |
tcacacaatgtttcaaaaacctcaaggattttaaacaaacgctctggtgagtgaattccactagagtgactagacacataatcaacaaaatttagaagtt |
31382010 |
T |
|
| Q |
101 |
taatagtggattccctgcatatttagatgaaggagaaatcagccgcggatgagaatccaatgaagacacggtcacaaagacttcgctcaccaggaaaaag |
200 |
Q |
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| T |
31382009 |
taatagtggattccctgcatatttagatgaagaagaaatcagccgcagatgagaatccaaagaagacacggtcacaaagtcttcgctcaccagggaaaac |
31381910 |
T |
|
| Q |
201 |
tatcttgagagcgacattgaaagttctaatcca---ttcaatctcgtcttcgagatccttccatgacatattgtgaacgtcctcaatattgagctttgta |
297 |
Q |
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| T |
31381909 |
tatcttgagagc-acattgaaagttctaatccatctttcaatctcgtcttcgagatccttccatgacatattgtgaacgtcctcaatattgagctttgta |
31381811 |
T |
|
| Q |
298 |
agccgaataatctatgcattaggcaactgttgtacacatcggaaaaatccttctcacacccagccatcatcacgacctttgct |
380 |
Q |
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| T |
31381810 |
agccgaataatctatgcattaggcaactgttttacacatgggaaaaatccttctcacacccagccatcatcatgacctttgct |
31381728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 7 - 322
Target Start/End: Complemental strand, 31318579 - 31318269
Alignment:
| Q |
7 |
aatgtttcaaaaacctcgaggattttaaacaaacgctctggtgagtgaattccaatagagtgactagacacataatcaacaaaatttagaagtttaatag |
106 |
Q |
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| T |
31318579 |
aatgtttcaaaaacctcaaggattttaaacaaacgctctggtgagtgacttcca---------ctggacacataatcaaaaaagtttagaagttgaatgg |
31318489 |
T |
|
| Q |
107 |
tggattccctgcatatttagatgaaggagaaatcagccgcggatgagaatccaatgaagacacggtcacaaagacttcgctcaccaggaaaaagtatctt |
206 |
Q |
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||||||||||||| || | |||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||| | ||| ||||||| ||| |
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| T |
31318488 |
tggattccctgcaaatctccatgaaggagaaatcagccgcggatgagaatccaaagaagatgcggtcacaaagtcttcgctcgctagggaaaagtacctt |
31318389 |
T |
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| Q |
207 |
gagagcgacattgaaagttctaatcca---ttcaatctcgtcttcgagatccttccatgacatattgtgaacgtcctcaatattgagctt-tgtaagccg |
302 |
Q |
| |
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||||||||||||||||||||||||||| |||||||| |||||| ||||||||| |||||||||||||||||||||||||| ||||||| ||||||||| |
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| T |
31318388 |
gagagcgacattgaaagttctaatccatctttcaatcttgtcttcaagatccttcgatgacatattgtgaacgtcctcaatactgagcttctgtaagccg |
31318289 |
T |
|
| Q |
303 |
aataatctatgcattaggca |
322 |
Q |
| |
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|||||| ||||||||||||| |
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| T |
31318288 |
aataatttatgcattaggca |
31318269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 7 - 322
Target Start/End: Complemental strand, 31369689 - 31369379
Alignment:
| Q |
7 |
aatgtttcaaaaacctcgaggattttaaacaaacgctctggtgagtgaattccaatagagtgactagacacataatcaacaaaatttagaagtttaatag |
106 |
Q |
| |
|
||||||||||||||||| ||||||||||||| |||||||||||||||| ||||| || ||||||||||||| ||| |||||||||| ||| | |
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| T |
31369689 |
aatgtttcaaaaacctcaaggattttaaacagacgctctggtgagtgacttcca---------ctggacacataatcaaaaaagtttagaagttgaatgg |
31369599 |
T |
|
| Q |
107 |
tggattccctgcatatttagatgaaggagaaatcagccgcggatgagaatccaatgaagacacggtcacaaagacttcgctcaccaggaaaaagtatctt |
206 |
Q |
| |
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||||||||||| | || | || ||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||| |||| ||||||| || |
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| T |
31369598 |
tggattccctggaaatctccatcaaggagaaatcagccgcggatgagaatccaaagaagatgcggtcacaaagtcttcgctcgccagagaaaagtacatt |
31369499 |
T |
|
| Q |
207 |
gagagcgacattgaaagttctaatcca---ttcaatctcgtcttcgagatccttccatgacatattgtgaacgtcctcaatattgagctt-tgtaagccg |
302 |
Q |
| |
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|||||| |||||||||||||||||||| |||||||| |||||| |||||||||| ||||||||||||||||||||||||| ||||||| ||||||||| |
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| T |
31369498 |
gagagcaacattgaaagttctaatccatctttcaatcttgtcttcaagatccttccgtgacatattgtgaacgtcctcaatactgagcttctgtaagccg |
31369399 |
T |
|
| Q |
303 |
aataatctatgcattaggca |
322 |
Q |
| |
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|||||| ||||||||||||| |
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| T |
31369398 |
aataatttatgcattaggca |
31369379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 202 - 380
Target Start/End: Complemental strand, 31333110 - 31332929
Alignment:
| Q |
202 |
atcttgagagcgacattgaaagttctaatccat---tcaatctcgtcttcgagatccttccatgacatattgtgaacgtcctcaatattgagctttgtaa |
298 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
31333110 |
atcttgagagcgacattgaaagttctaatccatctttcaatctcgtctttgagatccttccatgacatattgtgaacgtcctcaatattgagcttagtaa |
31333011 |
T |
|
| Q |
299 |
gccgaataatctatgcattaggcaactgttgtacacatcggaaaaatccttctcacacccagccatcatcacgacctttgct |
380 |
Q |
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| T |
31333010 |
gccgaataatctatgcattaggcaactgttgtacatctgggaaaaatccttctcacacccagccatcatcatgacctttgct |
31332929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 319 - 364
Target Start/End: Complemental strand, 31318248 - 31318203
Alignment:
| Q |
319 |
ggcaactgttgtacacatcggaaaaatccttctcacacccagccat |
364 |
Q |
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| T |
31318248 |
ggcaattgttgtacacatcggaaaaatccttctcaaacccagccat |
31318203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 319 - 364
Target Start/End: Complemental strand, 31369358 - 31369313
Alignment:
| Q |
319 |
ggcaactgttgtacacatcggaaaaatccttctcacacccagccat |
364 |
Q |
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| T |
31369358 |
ggcaattgttgtacacatcggaaaaatccttctcaaacctagccat |
31369313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 234
Target Start/End: Complemental strand, 31333141 - 31333109
Alignment:
| Q |
202 |
atcttgagagcgacattgaaagttctaatccat |
234 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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| T |
31333141 |
atcttgagagcgacattgaaagttctaatccat |
31333109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 238 - 293
Target Start/End: Complemental strand, 31314144 - 31314089
Alignment:
| Q |
238 |
atctcgtcttcgagatccttccatgacatattgtgaacgtcctcaatattgagctt |
293 |
Q |
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|||||||| || ||||||||||||| |||||||||||| |||||||| ||| |||| |
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| T |
31314144 |
atctcgtcatcaagatccttccatggcatattgtgaacatcctcaatgttgggctt |
31314089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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