View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10346_low_21 (Length: 363)
Name: NF10346_low_21
Description: NF10346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10346_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 297; Significance: 1e-167; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 27 - 355
Target Start/End: Complemental strand, 34359791 - 34359463
Alignment:
| Q |
27 |
acaccttggtccagaagacttgcacatgcactacaagaagacggtcaaaccatcagctctataccattgttggaccatgataagagttcagaagatcatt |
126 |
Q |
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| T |
34359791 |
acaccttggtccagaagacttgcacatgcactacaagaagacggtcaaaccatcagctctataccattgttggaccatgataagagttcagaagatcatt |
34359692 |
T |
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| Q |
127 |
cacattggaccaagaacaaccacacaagtgagagagaccacatctccatctaagccatttgcaannnnnnnnactggaaaacacaacttcattctattga |
226 |
Q |
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| T |
34359691 |
cacattggaccaagaacaaccacacaagtgagagagaccacatctccatctaagccatttgcaattttttttactggaaaacacaacttcattctattga |
34359592 |
T |
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| Q |
227 |
atgttaaagcagtcaagctactccattgcagtaaactacccaatacgaaaattaatgtgcatttgatcgggtgtgaaatttttgttaaatcttgatctaa |
326 |
Q |
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| T |
34359591 |
atgttaaagcagtcaagctactccattgcagtaaactacccaatacgaaaattaatgtgcatttggtcgggtgtgaaatttttgttaaatcttgatctaa |
34359492 |
T |
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| Q |
327 |
ccattaagctattactcgtgtcctatgct |
355 |
Q |
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| T |
34359491 |
ccattaagctattactcgtgtcatatgct |
34359463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 164
Target Start/End: Complemental strand, 34354086 - 34353993
Alignment:
| Q |
71 |
tcaaaccatcagctctataccattgttggaccatgataagagttcaga-agatcattcacattggaccaagaacaaccacacaagtgagagagac |
164 |
Q |
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| T |
34354086 |
tcaaaccatcgactctatgccattgttggatcataagaagagt-cggagagatcatccacattggatcaagaacaaccatacaaatgagagagac |
34353993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 126 - 158
Target Start/End: Complemental strand, 31294379 - 31294347
Alignment:
| Q |
126 |
tcacattggaccaagaacaaccacacaagtgag |
158 |
Q |
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| T |
31294379 |
tcacattggaccaagagcaaccacacaagtgag |
31294347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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