View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10346_low_23 (Length: 345)

Name: NF10346_low_23
Description: NF10346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10346_low_23
NF10346_low_23
[»] chr3 (3 HSPs)
chr3 (1-345)||(29555336-29555680)
chr3 (133-264)||(50295459-50295586)
chr3 (30-142)||(50706403-50706514)
[»] chr1 (2 HSPs)
chr1 (129-230)||(19825121-19825221)
chr1 (187-230)||(2072461-2072504)
[»] chr7 (2 HSPs)
chr7 (194-252)||(46963923-46963981)
chr7 (194-251)||(44338199-44338256)
[»] chr4 (2 HSPs)
chr4 (194-252)||(16870560-16870618)
chr4 (187-241)||(54147572-54147626)
[»] chr2 (3 HSPs)
chr2 (194-252)||(8986122-8986180)
chr2 (200-270)||(38584277-38584347)
chr2 (129-197)||(38584140-38584208)
[»] chr5 (3 HSPs)
chr5 (194-251)||(24136719-24136776)
chr5 (187-251)||(11335480-11335543)
chr5 (129-241)||(9511733-9511841)
[»] chr8 (3 HSPs)
chr8 (62-133)||(41694893-41694964)
chr8 (194-251)||(20241876-20241933)
chr8 (194-251)||(20251134-20251191)
[»] chr6 (2 HSPs)
chr6 (187-261)||(21861953-21862027)
chr6 (247-295)||(28063835-28063883)


Alignment Details
Target: chr3 (Bit Score: 305; Significance: 1e-172; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 1 - 345
Target Start/End: Complemental strand, 29555680 - 29555336
Alignment:
Q  1 catccaaagcagcagcaactgaagggaggaaaccatatcaaacaaaacccgaattaaaccgaagagccaataaagggagaagtaaccaaaatgttcaaat 100  Q
    ||||||||| |||| |||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||    
T  29555680 catccaaaggagcaacaactgaagggaggaaaccatatcaaacaaaaccggaatcaaaccgaagagccaataaagggagaagtaaccaaaatgttcaaat 29555581  T
Q  101 atgcctttaatgagaactcttcacaaataaattgtgatcacttgactcactaagcaattaaattgtgagcacttaactcaccaactaaacaatcaaacca 200  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||| ||    
T  29555580 atgcctttaatgagaactcttcacaaacaaattgtgatcacttgactaactaagcaactaaattgtgagcaattaactcaccaactaaacaatcaaatca 29555481  T
Q  201 attgtgagcactatcttaactcacccaacatccaaataaatcggaccaaactgaaccaaattaatctaaacaaaaccaaaccaagacaaattgaataaca 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29555480 attgtgagcactatcttaactcacccaacatccaaataaatcggaccaaactgaaccaaattaatctaaacaaaaccaaaccaagacaaattgaataaca 29555381  T
Q  301 ccaatgcgaaccaatacgaatggagcaaaggagagacgcaatgag 345  Q
    |||||||||||||||||||||||| ||||||||||||||||||||    
T  29555380 ccaatgcgaaccaatacgaatggaacaaaggagagacgcaatgag 29555336  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 133 - 264
Target Start/End: Complemental strand, 50295586 - 50295459
Alignment:
Q  133 tgtgatcacttgactcactaagcaattaaattgtgagcacttaactcaccaactaaacaatcaaaccaattgtgagcactatcttaactcacccaacatc 232  Q
    ||||| |||| ||||||| || |||  ||||||||||||||| || ||| ||  |||||||||    ||||||| ||||||||| |||||| |||||| |    
T  50295586 tgtgagcactcgactcacgaaacaaccaaattgtgagcacttgacccactaaacaaacaatca----aattgtgtgcactatctcaactcatccaacaac 50295491  T
Q  233 caaataaatcggaccaaactgaaccaaattaa 264  Q
    |||| |||| | ||||||| |||| |||||||    
T  50295490 caaacaaattgaaccaaacagaacgaaattaa 50295459  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 142
Target Start/End: Complemental strand, 50706514 - 50706403
Alignment:
Q  30 aaaccatatcaaacaaaacccgaattaaaccgaagagccaataaagggagaagtaaccaaaatgttcaaatatgcctttaatgagaactcttcacaaata 129  Q
    |||||||||||||| ||| |  ||| |||  ||||||| |||| || |||||| | | ||||| |||||||||| ||| ||||||||||||||||||| |    
T  50706514 aaaccatatcaaaccaaatcgaaatcaaatagaagagcaaatagagagagaagca-cgaaaatattcaaatatgtcttcaatgagaactcttcacaaaca 50706416  T
Q  130 aattgtgatcact 142  Q
    |||| ||| ||||    
T  50706415 aattttgagcact 50706403  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 129 - 230
Target Start/End: Original strand, 19825121 - 19825221
Alignment:
Q  129 aaattgtgatcacttgactcactaagcaattaaattgtgagcacttaactcaccaactaaacaatcaaaccaattgtgagcactatcttaactcacccaa 228  Q
    ||||||||| |||| ||||| | || |||  |||||||||||||||| ||||||||| |||||| ||||| ||||||||||| |||||| ||||||| ||    
T  19825121 aaattgtgagcactcgactcgccaaacaaccaaattgtgagcactta-ctcaccaaccaaacaaacaaacaaattgtgagcattatcttgactcaccaaa 19825219  T
Q  229 ca 230  Q
    ||    
T  19825220 ca 19825221  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 187 - 230
Target Start/End: Original strand, 2072461 - 2072504
Alignment:
Q  187 aaacaatcaaaccaattgtgagcactatcttaactcacccaaca 230  Q
    |||||||||||||||| |||||| ||||||| ||||||||||||    
T  2072461 aaacaatcaaaccaatggtgagccctatcttgactcacccaaca 2072504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 252
Target Start/End: Original strand, 46963923 - 46963981
Alignment:
Q  194 caaaccaattgtgagcactatcttaactcacccaacatccaaataaatcggaccaaact 252  Q
    ||||||||||||||||||||| || |||||||||||| ||||| |||| | ||||||||    
T  46963923 caaaccaattgtgagcactattttgactcacccaacaaccaaacaaattgaaccaaact 46963981  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 251
Target Start/End: Complemental strand, 44338256 - 44338199
Alignment:
Q  194 caaaccaattgtgagcactatcttaactcacccaacatccaaataaatcggaccaaac 251  Q
    ||||| ||||||||||||||| || |||||||||||| ||||| |||| | |||||||    
T  44338256 caaactaattgtgagcactattttgactcacccaacaaccaaacaaattgaaccaaac 44338199  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 252
Target Start/End: Complemental strand, 16870618 - 16870560
Alignment:
Q  194 caaaccaattgtgagcactatcttaactcacccaacatccaaataaatcggaccaaact 252  Q
    ||||||||||||||||||||| || |||||||||||| ||||| |||| | ||||||||    
T  16870618 caaaccaattgtgagcactattttgactcacccaacaaccaaacaaattgaaccaaact 16870560  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 241
Target Start/End: Complemental strand, 54147626 - 54147572
Alignment:
Q  187 aaacaatcaaaccaattgtgagcactatcttaactcacccaacatccaaataaat 241  Q
    |||||| ||||||||||||||| |||||||| ||||||| |||| ||||| ||||    
T  54147626 aaacaaacaaaccaattgtgaggactatcttgactcacctaacaaccaaacaaat 54147572  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 252
Target Start/End: Complemental strand, 8986180 - 8986122
Alignment:
Q  194 caaaccaattgtgagcactatcttaactcacccaacatccaaataaatcggaccaaact 252  Q
    ||||||||||||||||||||| || |||||||||||| ||||| |||| | ||||||||    
T  8986180 caaaccaattgtgagcactattttgactcacccaacaaccaaacaaattgaaccaaact 8986122  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 270
Target Start/End: Original strand, 38584277 - 38584347
Alignment:
Q  200 aattgtgagcactatcttaactcacccaacatccaaataaatcggaccaaactgaaccaaattaatctaaa 270  Q
    ||||||||||||||| || |||||||||||| ||||| |||| | |||||||| |||| ||| || |||||    
T  38584277 aattgtgagcactattttgactcacccaacaaccaaacaaattgaaccaaactaaaccgaataaaactaaa 38584347  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 197
Target Start/End: Original strand, 38584140 - 38584208
Alignment:
Q  129 aaattgtgatcacttgactcactaagcaattaaattgtgagcacttaactcaccaactaaacaatcaaa 197  Q
    ||||||||| ||||| |||||| || | |  ||||||||||||||| |||||||||| |||||| ||||    
T  38584140 aaattgtgagcacttaactcaccaaactaccaaattgtgagcacttgactcaccaaccaaacaaccaaa 38584208  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 194 - 251
Target Start/End: Complemental strand, 24136776 - 24136719
Alignment:
Q  194 caaaccaattgtgagcactatcttaactcacccaacatccaaataaatcggaccaaac 251  Q
    ||||||||||||||||||||| || |||||||||||| ||||| |||| | |||||||    
T  24136776 caaaccaattgtgagcactattttgactcacccaacaaccaaacaaattgaaccaaac 24136719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 251
Target Start/End: Original strand, 11335480 - 11335543
Alignment:
Q  187 aaacaatcaaaccaattgtgagcactatcttaactcacccaacatccaaataaatcggaccaaac 251  Q
    |||||| |||||||||||||||||||||||| ||||| |||||| ||||| |||| | |||||||    
T  11335480 aaacaaacaaaccaattgtgagcactatcttgactca-ccaacaaccaaacaaattgaaccaaac 11335543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 129 - 241
Target Start/End: Complemental strand, 9511841 - 9511733
Alignment:
Q  129 aaattgtgatcacttgactcactaagcaattaaattgtgagcacttaactcaccaactaaacaatcaaaccaattgtgagcactatcttaactcacccaa 228  Q
    ||||||||| |||| ||||||| || |||   || ||||||||||  |||||||||    |||| ||||| ||||||||| |||||||||||||||| ||    
T  9511841 aaattgtgagcactcgactcaccaaacaaccgaagtgtgagcactcgactcaccaa----acaaacaaacgaattgtgaggactatcttaactcacctaa 9511746  T
Q  229 catccaaataaat 241  Q
    || ||||| ||||    
T  9511745 caaccaaacaaat 9511733  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 62 - 133
Target Start/End: Original strand, 41694893 - 41694964
Alignment:
Q  62 aagagccaataaagggagaagtaaccaaaatgttcaaatatgcctttaatgagaactcttcacaaataaatt 133  Q
    ||||||| ||| | ||||||  ||| ||| |||||||||||| ||||||||| ||||||||||||| |||||    
T  41694893 aagagcctatagaaggagaaccaactaaattgttcaaatatgtctttaatgataactcttcacaaacaaatt 41694964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 251
Target Start/End: Complemental strand, 20241933 - 20241876
Alignment:
Q  194 caaaccaattgtgagcactatcttaactcacccaacatccaaataaatcggaccaaac 251  Q
    ||||| ||||||||||||||| || |||||||||||| ||||| |||| | |||||||    
T  20241933 caaactaattgtgagcactattttgactcacccaacaaccaaacaaattgaaccaaac 20241876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 251
Target Start/End: Original strand, 20251134 - 20251191
Alignment:
Q  194 caaaccaattgtgagcactatcttaactcacccaacatccaaataaatcggaccaaac 251  Q
    ||||| ||||||||||||||| || |||||||||||| ||||| |||| | |||||||    
T  20251134 caaactaattgtgagcactattttgactcacccaacaaccaaacaaattgaaccaaac 20251191  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 261
Target Start/End: Complemental strand, 21862027 - 21861953
Alignment:
Q  187 aaacaatcaaaccaattgtgagcactatcttaactcacccaacatccaaataaatcggaccaaactgaaccaaat 261  Q
    |||||| ||||||||||||||| ||||| || |||||| ||| | |||||||||| | |||||||  ||||||||    
T  21862027 aaacaaacaaaccaattgtgagaactattttgactcactcaaaaaccaaataaattgaaccaaacgaaaccaaat 21861953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 247 - 295
Target Start/End: Original strand, 28063835 - 28063883
Alignment:
Q  247 caaactgaaccaaattaatctaaacaaaaccaaaccaagacaaattgaa 295  Q
    |||||||||||||||||| |  ||||||| |||||||| ||||||||||    
T  28063835 caaactgaaccaaattaaaccgaacaaaatcaaaccaatacaaattgaa 28063883  T

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