View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10346_low_24 (Length: 343)

Name: NF10346_low_24
Description: NF10346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10346_low_24
NF10346_low_24
[»] chr1 (3 HSPs)
chr1 (197-282)||(4203006-4203091)
chr1 (98-165)||(4202907-4202974)
chr1 (300-328)||(4203097-4203125)


Alignment Details
Target: chr1 (Bit Score: 82; Significance: 1e-38; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 197 - 282
Target Start/End: Original strand, 4203006 - 4203091
Alignment:
Q  197 atgtagctacaataacacgatgagttgttatcttcaatcttctcaattgttgttgttgtttggttgcatgtgccaccatccaattc 282  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  4203006 atgtagctacaataacacgatgagttgttatcttcaatcttctcaattgctgttgttgtttggttgcatgtgccaccatccaattc 4203091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 98 - 165
Target Start/End: Original strand, 4202907 - 4202974
Alignment:
Q  98 ttgttttaccaagaagattgcgcaagtcagcgaattggtggtgagtgggagagcgtggaattttggga 165  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4202907 ttgttttaccaagaagattgcgcaagtcagcgaattggtggtgagtgggagagcgtggaattttggga 4202974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 300 - 328
Target Start/End: Original strand, 4203097 - 4203125
Alignment:
Q  300 catcatcatcactttctcttgcttttttc 328  Q
    |||||||||||||||||||||||||||||    
T  4203097 catcatcatcactttctcttgcttttttc 4203125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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