View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10346_low_26 (Length: 338)
Name: NF10346_low_26
Description: NF10346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10346_low_26 |
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Alignment Details
Target: chr4 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 21 - 328
Target Start/End: Original strand, 53557739 - 53558046
Alignment:
| Q |
21 |
acaatgacataaaaaactattggaacacaagattgaagaagaaattactcggaaagcgaaaacagtcaaatatcaacaacagcttgatgaaccaaaagga |
120 |
Q |
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| T |
53557739 |
acaatgacataaaaaactattggaacacaagattgaagaagaaattactcggaaagcgaaaacagtcgaatataaacaactgcttgatgaaccaaaagga |
53557838 |
T |
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| Q |
121 |
cacaaatggaatagatgagaattcttattcaaattcattaagtagctcagctcttgagagacttcaacttcatatgcaacttcaaagccttcaaaaccct |
220 |
Q |
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| T |
53557839 |
cacaaatggaatagatgagaattcttattcaaattcattaagtagctcagctcttgagagacttcaacttcatatgcaacttcaaagccttcaaaaccct |
53557938 |
T |
|
| Q |
221 |
ttgtctttttacagtaataaccctgctgcactagtttggccaaagttgcatccttctcaagaaaaaatgatccaaattagccttcaaaactctaataaca |
320 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53557939 |
ttgtctttttacaataataaccctgctgcactagtttggccaaagttgcatccttctcaagaaaaaatgatccaaattagccttcaaaactctaataaca |
53558038 |
T |
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| Q |
321 |
accctatg |
328 |
Q |
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|||||||| |
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| T |
53558039 |
accctatg |
53558046 |
T |
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