View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10346_low_27 (Length: 334)
Name: NF10346_low_27
Description: NF10346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10346_low_27 |
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Alignment Details
Target: chr2 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 321
Target Start/End: Complemental strand, 3899255 - 3898933
Alignment:
| Q |
1 |
acatgtatgttaatattggttattattattgttgttgt---caaaagagtacatataacaatcaatttcttgagggaattatgcagcacatgttaacaaa |
97 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3899255 |
acatgtatgttaatattggttattattattgttgttgttgtcaaaagagtacatataacaatcaatttcttgagggaattatgcagcacatgttaacaaa |
3899156 |
T |
|
| Q |
98 |
catatatgtattatgaaagttgagaaacataaattcacagcattataatataataccgattgattaatgccttaattcatcattttttacattaaatatc |
197 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |
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| T |
3899155 |
catatctgtattatgaaagttgagaaacataaattcacagcattataatataataccgattgattaatgccttaattcattattttttacatt-aatatc |
3899057 |
T |
|
| Q |
198 |
ccttactccttcccagccacgacattcttggccgcgtccaatgctccttccaccgcctcctttgcctgatctcctgcattcttcagagcctctgtcgctg |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3899056 |
ccttactccttcccagccacgacattcttggccgcgtccaatgctccttccaccgcctcctttgcctgatctcctgcattcttcagagcctctgtcgctg |
3898957 |
T |
|
| Q |
298 |
acccagcagcctcctgtgtgttct |
321 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
3898956 |
acccagcagcctcctgtgtgttct |
3898933 |
T |
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