View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10346_low_28 (Length: 333)

Name: NF10346_low_28
Description: NF10346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10346_low_28
NF10346_low_28
[»] chr4 (4 HSPs)
chr4 (1-169)||(46550454-46550615)
chr4 (170-243)||(33879195-33879268)
chr4 (166-235)||(33878600-33878669)
chr4 (265-319)||(33879128-33879182)
[»] scaffold0386 (2 HSPs)
scaffold0386 (169-319)||(675-825)
scaffold0386 (186-235)||(1284-1333)
[»] chr5 (5 HSPs)
chr5 (168-319)||(13869741-13869892)
chr5 (170-243)||(27641421-27641494)
chr5 (169-235)||(27640854-27640920)
chr5 (190-235)||(13869240-13869285)
chr5 (265-319)||(27641344-27641398)
[»] chr8 (3 HSPs)
chr8 (164-243)||(38460872-38460951)
chr8 (186-228)||(38460427-38460469)
chr8 (265-319)||(38460794-38460848)
[»] chr7 (3 HSPs)
chr7 (168-243)||(29735099-29735174)
chr7 (265-319)||(29735198-29735252)
chr7 (193-235)||(29735715-29735759)
[»] chr3 (3 HSPs)
chr3 (186-243)||(49850835-49850892)
chr3 (186-229)||(49851428-49851471)
chr3 (265-319)||(49850914-49850968)


Alignment Details
Target: chr4 (Bit Score: 135; Significance: 3e-70; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 46550454 - 46550615
Alignment:
Q  1 agtcttctcttccaaaatatgagcttttgttttcacttcttgagttgacgaagagaagaaattattttgattaggctttttatactagggctaactcatt 100  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||      
T  46550454 agtcttctcttccaaaacatgagcttttgttttcacttcttgagttgacgaagagaagaaattattttgattaggctttttataatagggctaactca-- 46550551  T
Q  101 attatttattacacaatcaacattaaaaggtagactttgtttttaagtagtgtttatctttataaacta 169  Q
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46550552 -----ttattacacaatcaacattaaaaggtagactttgtttttaagtagtgtttatctttataaacta 46550615  T

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Target: chr4; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 170 - 243
Target Start/End: Complemental strand, 33879268 - 33879195
Alignment:
Q  170 gagaaatttttacatggaaacgtacataacatgtggcacttacaaacatccaatgaaatcgtgacatatcatta 243  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33879268 gagaaatttttacatggaaacgtacataacatgtggcacttacaaacatccaatgaaatcgtgacatatcatta 33879195  T

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Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 166 - 235
Target Start/End: Original strand, 33878600 - 33878669
Alignment:
Q  166 actagagaaatttttacatggaaacgtacataacatgtggcacttacaaacatccaatgaaatcgtgaca 235  Q
    |||||||||||  || ||| |||||||||||||||||||||||||||||||||||||||||||| |||||    
T  33878600 actagagaaatacttgcatagaaacgtacataacatgtggcacttacaaacatccaatgaaatcatgaca 33878669  T

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Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 265 - 319
Target Start/End: Complemental strand, 33879182 - 33879128
Alignment:
Q  265 tgaaaatagaaatagaaccattgtcatccttttgcaacttggtatagatgatgtc 319  Q
    |||||||||||| |||||||| |||||||||||||||| |||||||||| |||||    
T  33879182 tgaaaatagaaacagaaccatcgtcatccttttgcaacgtggtatagatcatgtc 33879128  T

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Target: scaffold0386 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: scaffold0386
Description:

Target: scaffold0386; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 169 - 319
Target Start/End: Original strand, 675 - 825
Alignment:
Q  169 agagaaatttttacatggaaacgtacataacatgtggcacttacaaacatccaatgaaatcgtgacatatcattannnnnnnnnatttnnnnnnnntgaa 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||         ||||        ||||    
T  675 agagaaatttttacatggaaacgtacataacatgtggcacttacaaacatccaatgaaatcatgacatatcattatttttttttatttaaaaaaaatgaa 774  T
Q  269 aatagaaatagaaccattgtcatccttttgcaacttggtatagatgatgtc 319  Q
    |||||||| |||||||| |||||||||||||||| |||||||||| |||||    
T  775 aatagaaacagaaccatcgtcatccttttgcaacgtggtatagatcatgtc 825  T

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Target: scaffold0386; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 186 - 235
Target Start/End: Complemental strand, 1333 - 1284
Alignment:
Q  186 gaaacgtacataacatgtggcacttacaaacatccaatgaaatcgtgaca 235  Q
    ||||||||||||||||||| |||||||||||||||||| ||||| |||||    
T  1333 gaaacgtacataacatgtgacacttacaaacatccaataaaatcatgaca 1284  T

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Target: chr5 (Bit Score: 69; Significance: 6e-31; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 168 - 319
Target Start/End: Complemental strand, 13869892 - 13869741
Alignment:
Q  168 tagagaaatttttacatggaaacgtacataacatgtggcacttacaaacatccaatgaaatcgtgacatatcattannnnnnnnnatttnnnnnnnntga 267  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||         ||||        |||    
T  13869892 tagagaaatttttacatagaaacgtacataacatgtggcacttacaaacattcaatgaaatcatgacatatcattattttttttaatttaaaaaaaatga 13869793  T
Q  268 aaatagaaatagaaccattgtcatccttttgcaacttggtatagatgatgtc 319  Q
    ||||||||| |||||||| |||||||||||||| | |||||||||| |||||    
T  13869792 aaatagaaacagaaccatcgtcatccttttgcatcgtggtatagatcatgtc 13869741  T

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Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 170 - 243
Target Start/End: Complemental strand, 27641494 - 27641421
Alignment:
Q  170 gagaaatttttacatggaaacgtacataacatgtggcacttacaaacatccaatgaaatcgtgacatatcatta 243  Q
    ||||||||||||||| |||||||||||| |||||||||||||||||||| |||||||||| |||||||||||||    
T  27641494 gagaaatttttacatagaaacgtacatatcatgtggcacttacaaacattcaatgaaatcatgacatatcatta 27641421  T

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Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 169 - 235
Target Start/End: Original strand, 27640854 - 27640920
Alignment:
Q  169 agagaaatttttacatggaaacgtacataacatgtggcacttacaaacatccaatgaaatcgtgaca 235  Q
    ||||||||  || ||| ||| |||||||||||||||||||||||||||||||||||||||| |||||    
T  27640854 agagaaatacttgcatagaagcgtacataacatgtggcacttacaaacatccaatgaaatcatgaca 27640920  T

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Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 190 - 235
Target Start/End: Original strand, 13869240 - 13869285
Alignment:
Q  190 cgtacataacatgtggcacttacaaacatccaatgaaatcgtgaca 235  Q
    |||||||||||||||||||||||||||||||||||||||| |||||    
T  13869240 cgtacataacatgtggcacttacaaacatccaatgaaatcatgaca 13869285  T

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Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 265 - 319
Target Start/End: Complemental strand, 27641398 - 27641344
Alignment:
Q  265 tgaaaatagaaatagaaccattgtcatccttttgcaacttggtatagatgatgtc 319  Q
    |||||||||||| |||||||| |||||||||||||| | |||||||||| |||||    
T  27641398 tgaaaatagaaacagaaccatcgtcatccttttgcatcgtggtatagatcatgtc 27641344  T

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Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 164 - 243
Target Start/End: Complemental strand, 38460951 - 38460872
Alignment:
Q  164 aaactagagaaatttttacatggaaacgtacataacatgtggcacttacaaacatccaatgaaatcgtgacatatcatta 243  Q
    |||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  38460951 aaacaagagaaatttttacatagaaacgtacataacatgtggcacttacaaacatccaatgaaatcatgacatatcatta 38460872  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 186 - 228
Target Start/End: Original strand, 38460427 - 38460469
Alignment:
Q  186 gaaacgtacataacatgtggcacttacaaacatccaatgaaat 228  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  38460427 gaaacgtacataacatgtggcacttacaaacatccaatgaaat 38460469  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 265 - 319
Target Start/End: Complemental strand, 38460848 - 38460794
Alignment:
Q  265 tgaaaatagaaatagaaccattgtcatccttttgcaacttggtatagatgatgtc 319  Q
    |||||||||||| |||||||| |||||||||||||||| |||||||||| |||||    
T  38460848 tgaaaatagaaacagaaccatcgtcatccttttgcaacgtggtatagatcatgtc 38460794  T

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Target: chr7 (Bit Score: 52; Significance: 9e-21; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 168 - 243
Target Start/End: Original strand, 29735099 - 29735174
Alignment:
Q  168 tagagaaatttttacatggaaacgtacataacatgtggcacttacaaacatccaatgaaatcgtgacatatcatta 243  Q
    |||||||||| |||||| ||||| |||||||||||||||||||||||||||||||| ||||  |||||||||||||    
T  29735099 tagagaaattcttacatagaaacttacataacatgtggcacttacaaacatccaataaaattatgacatatcatta 29735174  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 319
Target Start/End: Original strand, 29735198 - 29735252
Alignment:
Q  265 tgaaaatagaaatagaaccattgtcatccttttgcaacttggtatagatgatgtc 319  Q
    |||||||||||| |||||||| ||||| |||||||| | |||||||||| |||||    
T  29735198 tgaaaatagaaacagaaccatcgtcattcttttgcatcgtggtatagatcatgtc 29735252  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 235
Target Start/End: Complemental strand, 29735759 - 29735715
Alignment:
Q  193 acataacatgtggcacttacaaac--atccaatgaaatcgtgaca 235  Q
    ||||||||||||||||||||||||  ||||||||||||| |||||    
T  29735759 acataacatgtggcacttacaaacatatccaatgaaatcatgaca 29735715  T

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Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 186 - 243
Target Start/End: Original strand, 49850835 - 49850892
Alignment:
Q  186 gaaacgtacataacatgtggcacttacaaacatccaatgaaatcgtgacatatcatta 243  Q
    ||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||    
T  49850835 gaaacgtacataacatgtggcacttacaaacattcaatgaaatcatgacatatcatta 49850892  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 186 - 229
Target Start/End: Complemental strand, 49851471 - 49851428
Alignment:
Q  186 gaaacgtacataacatgtggcacttacaaacatccaatgaaatc 229  Q
    ||||| ||||||||||||||||||||||||||||||||||||||    
T  49851471 gaaacatacataacatgtggcacttacaaacatccaatgaaatc 49851428  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 319
Target Start/End: Original strand, 49850914 - 49850968
Alignment:
Q  265 tgaaaatagaaatagaaccattgtcatccttttgcaacttggtatagatgatgtc 319  Q
    |||||||||||| | |||||| |||||||||||||| | |||||||||| |||||    
T  49850914 tgaaaatagaaacataaccatcgtcatccttttgcatcgtggtatagatcatgtc 49850968  T

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