View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10346_low_33 (Length: 315)
Name: NF10346_low_33
Description: NF10346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10346_low_33 |
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| [»] chr1 (5 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 307; Significance: 1e-173; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 315
Target Start/End: Original strand, 4367400 - 4367714
Alignment:
| Q |
1 |
aagacttactgacacacctgaatcgaagaagatatttaacggggagaaacgaaagtacctcagcaatgagatcatcagagaggaccaccggcgataaagc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4367400 |
aagacttactgacacacctgaatcgaagaagatatttaacggggagaaacgaaagtacctcagcaatgagatcatcagagaggaccaccggcgataaagc |
4367499 |
T |
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| Q |
101 |
catagacgtagctgattggatattcatctcaaagcagcggtgttgtggttgaaacctaaaaacaaggctatattgtatattgctgttgcaaatgtgttgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4367500 |
catagacgtagctgattggatattcatctcaaagtagcggtgttgtggttgaaacctaaaaacaaggctatattgtatattgctgttgcaaatgtgttgt |
4367599 |
T |
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| Q |
201 |
gggaaatgaagttatatcatgtgtgactttcatatgcaagtacaaagtgcaaaactagtattgcacaataacttccatttcagtttccatcccatataaa |
300 |
Q |
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| T |
4367600 |
gggaaatgaagttatatcatgtgtgactttcatatgcaagtacaaagtgcaaaactagtattgcacaataacttccatttcagtttccatcccatataaa |
4367699 |
T |
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| Q |
301 |
attataggacaagct |
315 |
Q |
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| T |
4367700 |
actataggacaagct |
4367714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 4017598 - 4017688
Alignment:
| Q |
1 |
aagacttactgacacacctgaatcgaagaagatatttaacggggagaaacgaaagtacctcagcaatgagatcatcagagaggaccaccgg |
91 |
Q |
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| T |
4017598 |
aagatttactcacacacctaaattggagaagagatttcacgggaagaaacgaaagtacctcgacgatgagatcctcggagaggaccgccgg |
4017688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 10218216 - 10218126
Alignment:
| Q |
1 |
aagacttactgacacacctgaatcgaagaagatatttaacggggagaaacgaaagtacctcagcaatgagatcatcagagaggaccaccgg |
91 |
Q |
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|||| ||||| ||||||||||| | || |||| |||| || || ||||| ||||||||||| |||| |||||| || ||||||||| |||| |
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| T |
10218216 |
aagatttactcacacacctgaagcaaacaagagatttcaccggaagaaaggaaagtacctcggcaacgagatcttcggagaggaccgccgg |
10218126 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 4015780 - 4015841
Alignment:
| Q |
1 |
aagacttactgacacacctgaatcgaagaagatatttaacggggagaaacgaaagtacctca |
62 |
Q |
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| T |
4015780 |
aagacttactcacacacctgaatcgaacaagagatctcactggaagaaatgaaagtacctca |
4015841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 61
Target Start/End: Original strand, 21897365 - 21897422
Alignment:
| Q |
4 |
acttactgacacacctgaatcgaagaagatatttaacggggagaaacgaaagtacctc |
61 |
Q |
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| T |
21897365 |
acttacttacagacctgaatcgaataagagatctaacaggaagaaacgaaagtacctc |
21897422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 29105982 - 29105856
Alignment:
| Q |
1 |
aagacttactgacacacctgaatcgaagaagatatttaacggggagaaacgaaagtacctcagcaatgagatcatcagagaggaccaccggcgataaagc |
100 |
Q |
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||||||| |||||| |||| |||||||||||| || ||||||| || || ||||| || || || ||||||||||| | ||| ||||||| ||| | ||| |
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| T |
29105982 |
aagacttgctgacagacctaaatcgaagaagaaatataacgggaaggaaggaaagaacttctgcgatgagatcatcggggagaaccaccgacgacagagc |
29105883 |
T |
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| Q |
101 |
catagacgtagctgattggatattcat |
127 |
Q |
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| T |
29105882 |
catagactttgccgattgtatattcat |
29105856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 29480374 - 29480466
Alignment:
| Q |
1 |
aagacttactgacacacctgaatcgaagaagatatttaacggggagaaacgaaagtacctcagcaatgagatcatcagagaggaccaccggcg |
93 |
Q |
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||||||||| ||||||| ||||||||| | || |||| ||||| || || ||||||| ||| | ||||||||||||| ||||||||||||| |
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| T |
29480374 |
aagacttacagacacacttgaatcgaacaggagatttgacgggaaggaaggaaagtaactctgtgatgagatcatcaggaaggaccaccggcg |
29480466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 29922940 - 29923012
Alignment:
| Q |
1 |
aagacttactgacacacctgaatcgaagaagatatttaacggggagaaacgaaagtacctcagcaatgagatc |
73 |
Q |
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| T |
29922940 |
aagacttactaacactcttgaatcgaagaagaggtttcaccggaagaaaggaaagtacttcagcgatgagatc |
29923012 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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