View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10346_low_36 (Length: 300)
Name: NF10346_low_36
Description: NF10346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10346_low_36 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 27 - 300
Target Start/End: Original strand, 38406202 - 38406470
Alignment:
| Q |
27 |
taataactttgttcacaaagaccccagctccatcgatgaatgatatttagnnnnnnnaagtcaataatatgggtcccacttatgggagtcaaacaattac |
126 |
Q |
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| T |
38406202 |
taataactttgttcacaaagaccccagctccatcgatgaatgatatttagtttttttaagtcaataatatgggtcccacttatgggagtcaaacaattac |
38406301 |
T |
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| Q |
127 |
ttatgttagtttcatgtattttagttttgtccagtgcgtaagtaagttggttttgccgtaaggacggaaaaggttgtttttcactatttaatttaattta |
226 |
Q |
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| T |
38406302 |
ttatgttagtttcatgtattttagttttgtccagtgcgtaagtaagttggttttgccgtaaggacggaaaaggttgtttttcact-----atttaattta |
38406396 |
T |
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| Q |
227 |
attaataaatcttatttaatccaatggtaagatttattgattcaatagtaaaaacgaacttatgtataatgcaa |
300 |
Q |
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| T |
38406397 |
attaataaatcttatttaatccaatgataagatttattgattcaatagtaaaaacgaacttgtgtataatgcaa |
38406470 |
T |
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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 280
Target Start/End: Complemental strand, 30874218 - 30874186
Alignment:
| Q |
248 |
caatggtaagatttattgattcaatagtaaaaa |
280 |
Q |
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| T |
30874218 |
caatggtaagacttattgattcaatagtaaaaa |
30874186 |
T |
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