View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10346_low_37 (Length: 295)
Name: NF10346_low_37
Description: NF10346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10346_low_37 |
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Alignment Details
Target: chr4 (Bit Score: 260; Significance: 1e-145; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 27637509 - 27637800
Alignment:
| Q |
1 |
attgtaataacacttttcaaaataatatcacttttaaatcgaatgctgaatctcaataatacccttctttgccattccacaaattggacaagtttggagt |
100 |
Q |
| |
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|||||||||||| |||| | | |||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27637509 |
attgtaataacatttttgacagtaatatcaattttaaatcgaattctgaatctcgataatacccttctttgccattccacaaattggacaagtttggagt |
27637608 |
T |
|
| Q |
101 |
aaagcattacatgctttgcatgaagagagatgcctacatggcagaaataagacaccaagagtgtttgtcttacactttgaacaaaacacattgttttcac |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27637609 |
aaagcattacatgctttgcatgaagagagatgcctacatggcagaaataagacaccaagagtgtttgtcttacactttgaacaaaacacattgttttcac |
27637708 |
T |
|
| Q |
201 |
gtcttacacgcttttcagctctgacttcttccttttcaccacaacttgattccgcgtcattttccaccaacatccttactctctgcttctcc |
292 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
27637709 |
gtcttacacgcttttcagctctgacttcttccttttcaccacaacttgattccgcgtcattttccaccaacatccttactctcttcttctcc |
27637800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 34 - 292
Target Start/End: Original strand, 37353735 - 37353993
Alignment:
| Q |
34 |
ttaaatcgaatgctgaatctcaataatacccttctttgccattccacaaattggacaagtttggagtaaagcattacatgctttgcatgaagagagatgc |
133 |
Q |
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||||||| ||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37353735 |
ttaaatcaaattttgaatctcgataatacccttctttgccattccacagattggacaagtttggagtaaagcattacatgctttgcatgaagagagatgc |
37353834 |
T |
|
| Q |
134 |
ctacatggcagaaataagacaccaagagtgtttgtcttacactttgaacaaaacacattgttttcacgtcttacacgcttttcagctctgacttcttcct |
233 |
Q |
| |
|
|||||||| |||| ||||||||||||||||| ||||||| ||||||||||||||| ||| ||||||||||||||| |||||| |||||| |||||||||| |
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| T |
37353835 |
ctacatggaagaactaagacaccaagagtgtgtgtcttatactttgaacaaaacaaattcttttcacgtcttacatgcttttgagctcttacttcttcct |
37353934 |
T |
|
| Q |
234 |
tttcaccacaacttgattccgcgtcattttccaccaacatccttactctctgcttctcc |
292 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||||||||||| ||||||||| ||||||| |
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|
| T |
37353935 |
tttctccacaacttgattccgcatcattttccaccaacatcgttactctctccttctcc |
37353993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 34 - 292
Target Start/End: Original strand, 37365709 - 37365967
Alignment:
| Q |
34 |
ttaaatcgaatgctgaatctcaataatacccttctttgccattccacaaattggacaagtttggagtaaagcattacatgctttgcatgaagagagatgc |
133 |
Q |
| |
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||||||| ||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37365709 |
ttaaatcaaattttgaatctcgataatacccttctttgccattccacagattggacaagtttggagtaaagcattacatgctttgcatgaagagagatgc |
37365808 |
T |
|
| Q |
134 |
ctacatggcagaaataagacaccaagagtgtttgtcttacactttgaacaaaacacattgttttcacgtcttacacgcttttcagctctgacttcttcct |
233 |
Q |
| |
|
|||||||| |||| ||||||||||||||||| ||||||| ||||||||||||||| ||| ||||||||||||||| |||||| |||||| |||||||||| |
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|
| T |
37365809 |
ctacatggaagaactaagacaccaagagtgtgtgtcttatactttgaacaaaacaaattcttttcacgtcttacatgcttttgagctcttacttcttcct |
37365908 |
T |
|
| Q |
234 |
tttcaccacaacttgattccgcgtcattttccaccaacatccttactctctgcttctcc |
292 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||||||||||| ||||||||| ||||||| |
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|
| T |
37365909 |
tttctccacaacttgattccgcatcattttccaccaacatcgttactctctccttctcc |
37365967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 36 - 217
Target Start/End: Complemental strand, 12292680 - 12292496
Alignment:
| Q |
36 |
aaatcgaatgctgaatctcaataatacccttctttgccattccacaaattggacaagtttggagtaaagcattacatgctttgcatgaagagagatgcct |
135 |
Q |
| |
|
||||| ||| |||||||||||||| |||||||||| ||||||||| |||||||| | || ||||||||| | |||||||||||||||||| |||||||| |
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|
| T |
12292680 |
aaatcaaattctgaatctcaataacacccttctttttcattccacacattggacaggcttcgagtaaagcttcacatgctttgcatgaagaaagatgcct |
12292581 |
T |
|
| Q |
136 |
acatggcagaaataagacaccaagagtgtttgtcttacactttgaacaaaaca---cattgttttcacgtcttacacgcttttca |
217 |
Q |
| |
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|||||| | |||||||||| | | |||||| |||||||||| |||||||| ||||||| ||||||| |||||||||||| |
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|
| T |
12292580 |
acatggtataaataagacatctgaggagtttgtgttacactttggacaaaacatagtattgtttccacgtctgacacgcttttca |
12292496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 47 - 266
Target Start/End: Complemental strand, 12242929 - 12242707
Alignment:
| Q |
47 |
tgaatctcaataatacccttctttgccattccacaaattggacaagtttggagtaaagcattacatgctttgcatgaagagagatgcctacatggcagaa |
146 |
Q |
| |
|
||||| ||||||| ||| |||||| |||||||||| |||||||||| || |||| |||| | ||| |||||||||||||| ||||| ||||||||||||| |
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|
| T |
12242929 |
tgaatttcaataacaccattcttttccattccacagattggacaagctttgagtgaagcttcacacgctttgcatgaagaaagatgtctacatggcagaa |
12242830 |
T |
|
| Q |
147 |
ataagacaccaagagtgtttgtcttacactttgaacaaaac---acattgttttcacgtcttacacgcttttcagctctgacttcttccttttcaccaca |
243 |
Q |
| |
|
|||||||| | || | |||| ||||| |||| ||||||| | ||||||| ||||||| ||||| |||||| ||| || || || |||||||| || |
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| T |
12242829 |
ataagacatccgaagagcttgtgttacattttggacaaaacataatattgtttccacgtctaacacgtttttcaattcttacatcatcattttcaccgca |
12242730 |
T |
|
| Q |
244 |
acttgattccgcgtcattttcca |
266 |
Q |
| |
|
|| ||| | || |||||||||| |
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| T |
12242729 |
acatgagtttgcatcattttcca |
12242707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 99; Significance: 7e-49; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 50 - 291
Target Start/End: Original strand, 34697799 - 34698043
Alignment:
| Q |
50 |
atctcaataatacccttctttgccattccacaaattggacaagtttggagtaaagcattacatgctttgcatgaagagagatgcctacatggcagaaata |
149 |
Q |
| |
|
|||||||||| | ||||||||||||||||||| ||||||||||||||||||||||| | |||| ||||||| |||| |||||||||||||| ||||||| |
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|
| T |
34697799 |
atctcaataacatccttctttgccattccacatattggacaagtttggagtaaagcttcacattgtttgcataaagatagatgcctacatggaagaaata |
34697898 |
T |
|
| Q |
150 |
agacaccaagagtgtttgtcttacactttgaacaaaa---cacattgttttcacgtcttacacgcttttcagctctgacttcttccttttcaccacaact |
246 |
Q |
| |
|
||||||||| | |||||||||||||||||||||||| || ||||| || | ||| | |||||||||||||| ||||||| ||||||| |||| |
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|
| T |
34697899 |
agacaccaacaaagtttgtcttacactttgaacaaaacttcaaattgtcgtcgcttctcatgcgcttttcagctcttgcttcttcactttcaccgcaaca |
34697998 |
T |
|
| Q |
247 |
tgattccgcgtcattttccaccaacatccttactctctgcttctc |
291 |
Q |
| |
|
|||||||||||||||| ||| | ||||||| |||||| |||||| |
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|
| T |
34697999 |
tgattccgcgtcatttagcacaaccatccttgctctcttcttctc |
34698043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 50 - 291
Target Start/End: Original strand, 34720211 - 34720455
Alignment:
| Q |
50 |
atctcaataatacccttctttgccattccacaaattggacaagtttggagtaaagcattacatgctttgcatgaagagagatgcctacatggcagaaata |
149 |
Q |
| |
|
|||||||||| | ||||||||||||||||||| ||||||||||||||||||||||| | |||| ||||||| |||| |||||||||||||| ||||||| |
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|
| T |
34720211 |
atctcaataacatccttctttgccattccacatattggacaagtttggagtaaagcttcacattgtttgcataaagatagatgcctacatggaagaaata |
34720310 |
T |
|
| Q |
150 |
agacaccaagagtgtttgtcttacactttgaacaaaa---cacattgttttcacgtcttacacgcttttcagctctgacttcttccttttcaccacaact |
246 |
Q |
| |
|
||||||||| | |||||||||||||||||||||||| || ||||| || | ||| | |||||||||||||| ||||||| ||||||| |||| |
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|
| T |
34720311 |
agacaccaacaaagtttgtcttacactttgaacaaaacttcaaattgtcgtcgcttctcatgcgcttttcagctcttgcttcttcactttcaccgcaaca |
34720410 |
T |
|
| Q |
247 |
tgattccgcgtcattttccaccaacatccttactctctgcttctc |
291 |
Q |
| |
|
|||||||||||||||| ||| | ||||||| |||||| |||||| |
|
|
| T |
34720411 |
tgattccgcgtcatttagcacaaccatccttgctctcttcttctc |
34720455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 46 - 126
Target Start/End: Original strand, 27909927 - 27910007
Alignment:
| Q |
46 |
ctgaatctcaataatacccttctttgccattccacaaattggacaagtttggagtaaagcattacatgctttgcatgaaga |
126 |
Q |
| |
|
|||||||||||||| | |||||||| |||||||||| ||||||||| || ||||||||| | ||| ||||||||||||| |
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|
| T |
27909927 |
ctgaatctcaataacatccttcttttccattccacatattggacaaacttcgagtaaagcttcacacactttgcatgaaga |
27910007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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