View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10346_low_38 (Length: 293)
Name: NF10346_low_38
Description: NF10346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10346_low_38 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 155; Significance: 3e-82; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 36 - 274
Target Start/End: Complemental strand, 9482047 - 9481809
Alignment:
| Q |
36 |
atatagctcaacataaaggatatcagaagagtcgtgaagatatcctgaaaatccagacaaataaaaacctgcatcatttctaagaattccaatataaccg |
135 |
Q |
| |
|
|||||||| | |||||||||| |||||| |||||||||||||||| |||||||| ||| | ||||||||||||||||||||| ||||||| | |||| |
|
|
| T |
9482047 |
atatagcttagcataaaggatgtcagaacagtcgtgaagatatccggaaaatcctgacgagtaaaaacctgcatcatttctatgaattccgccaaaacca |
9481948 |
T |
|
| Q |
136 |
gttctagtgggggagtcaagacaactcccatcaacattgaggatgacaccagtgtggttgttttgattccacttgacaaatctgtcttccatagtaccgt |
235 |
Q |
| |
|
|||||||||||||| ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9481947 |
attctagtgggggagccaagacaactcccataaacattgaggatgacaccagagtggttgttttgattccacttgacaaatctgtcttccatagtaccgt |
9481848 |
T |
|
| Q |
236 |
ttgaagacaacggataagaggactttaaagattcaacca |
274 |
Q |
| |
|
||||||| || || ||||||||||||||||||||||||| |
|
|
| T |
9481847 |
ttgaagataaagggtaagaggactttaaagattcaacca |
9481809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 148; Significance: 4e-78; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 36 - 271
Target Start/End: Original strand, 31708312 - 31708547
Alignment:
| Q |
36 |
atatagctcaacataaaggatatcagaagagtcgtgaagatatcctgaaaatccagacaaataaaaacctgcatcatttctaagaattccaatataaccg |
135 |
Q |
| |
|
||||||||| |||||||||| || |||||||| |||||||||| |||||| || |||| ||||||||||||||||||||||||||||| |||||| |
|
|
| T |
31708312 |
atatagctccgcataaaggatgtctgaagagtcatgaagatatctggaaaattcaaacaagtaaaaacctgcatcatttctaagaattccgccataacca |
31708411 |
T |
|
| Q |
136 |
gttctagtgggggagtcaagacaactcccatcaacattgaggatgacaccagtgtggttgttttgattccacttgacaaatctgtcttccatagtaccgt |
235 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||| ||||||||||| | |||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
31708412 |
gttctagtgggggagccaagacaactcccatcaacattaaggatgacaccggagtggttgttttgattctacttgacaaatctgtcttccatagtaccgt |
31708511 |
T |
|
| Q |
236 |
ttgaagacaacggataagaggactttaaagattcaa |
271 |
Q |
| |
|
|| ||||||| || |||||||||||||||||||||| |
|
|
| T |
31708512 |
ttaaagacaaagggtaagaggactttaaagattcaa |
31708547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 107 - 230
Target Start/End: Original strand, 28481319 - 28481442
Alignment:
| Q |
107 |
catcatttctaagaattccaatataaccggttctagtgggggagtcaagacaactcccatcaacattgaggatgacaccagtgtggttgttttgattcca |
206 |
Q |
| |
|
||||||||||||||||||| |||||| |||||||||||||| |||||||||| ||||||||||| | ||||| | || ||||||||| |||||||| |
|
|
| T |
28481319 |
catcatttctaagaattccttcataaccagttctagtgggggaaccaagacaacttccatcaacattaaaaatgacgctagagtggttgttatgattcca |
28481418 |
T |
|
| Q |
207 |
cttgacaaatctgtcttccatagt |
230 |
Q |
| |
|
|||||||||| | ||||||||||| |
|
|
| T |
28481419 |
cttgacaaatatatcttccatagt |
28481442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 79; Significance: 6e-37; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 40 - 230
Target Start/End: Complemental strand, 18401246 - 18401056
Alignment:
| Q |
40 |
agctcaacataaaggatatcagaagagtcgtgaagatatcctgaaaatccagacaaataaaaacctgcatcatttctaagaattccaatataaccggttc |
139 |
Q |
| |
|
|||||| ||||||| || ||||||| || || | |||||| ||||| ||| |||| ||||| ||||||||||||||||||||||| |||||| |||| |
|
|
| T |
18401246 |
agctcagcataaagaatgacagaagaatcatggatatatccggaaaacccatacaagtaaaagcctgcatcatttctaagaattcctccataaccagttc |
18401147 |
T |
|
| Q |
140 |
tagtgggggagtcaagacaactcccatcaacattgaggatgacaccagtgtggttgttttgattccacttgacaaatctgtcttccatagt |
230 |
Q |
| |
|
||||||||||| |||||||||||||||||||||| || ||||| || |||||||| |||||||||||||||||| | ||||||||||| |
|
|
| T |
18401146 |
tagtgggggagccaagacaactcccatcaacattaagaatgacgttaggatggttgttatgattccacttgacaaatttatcttccatagt |
18401056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 47 - 273
Target Start/End: Original strand, 11767953 - 11768179
Alignment:
| Q |
47 |
cataaaggatatcagaagagtcgtgaagatatcctgaaaatccagacaaataaaaacctgcatcatttctaagaattccaatataaccggttctagtggg |
146 |
Q |
| |
|
||||||| ||||||||||| | || || ||| || |||| |||||||| ||||||| |||||||||||||||||||| ||| || ||||| || || |
|
|
| T |
11767953 |
cataaagaatatcagaagaattgttaatataaccgaaaaacccagacaagtaaaaacatgcatcatttctaagaattctgccatagccagttcttgtagg |
11768052 |
T |
|
| Q |
147 |
ggagtcaagacaactcccatcaacattgaggatgacaccagtgtggttgttttgattccacttgacaaatctgtcttccatagtaccgtttgaagacaac |
246 |
Q |
| |
|
||| ||||||| || ||||||||||| ||||||| |||| ||||||||| ||||||||||||| |||| |||||||||||||| ||| | |||||| |
|
|
| T |
11768053 |
ggaaccaagacatcttccatcaacattaaggatgatgccagagtggttgttgtgattccacttgaaaaatttgtcttccatagtaatgttaggagacaaa |
11768152 |
T |
|
| Q |
247 |
ggataagaggactttaaagattcaacc |
273 |
Q |
| |
|
|| ||||||| ||||||||| |||||| |
|
|
| T |
11768153 |
gggtaagagggctttaaagagtcaacc |
11768179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 194
Target Start/End: Original strand, 34295584 - 34295697
Alignment:
| Q |
82 |
gaaaatccagacaaataaaaacctgcatcatttctaagaattccaatataaccggttctagtgggggagtcaagacaactcccatcaaca-ttgaggatg |
180 |
Q |
| |
|
|||||||| ||||| | ||||||||||||||||| | ||||||| ||| || | ||| || |||||||||||||| | ||||||||| ||||| ||| |
|
|
| T |
34295584 |
gaaaatcctgacaagttgaaacctgcatcatttcttaaaattccaccatagccagctcttgtttgggagtcaagacaattgccatcaacatttgagaatg |
34295683 |
T |
|
| Q |
181 |
acaccagtgtggtt |
194 |
Q |
| |
|
||||| | |||||| |
|
|
| T |
34295684 |
acacctgagtggtt |
34295697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University