View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10346_low_39 (Length: 270)

Name: NF10346_low_39
Description: NF10346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10346_low_39
NF10346_low_39
[»] chr1 (3 HSPs)
chr1 (17-270)||(28610673-28610926)
chr1 (140-267)||(28610904-28611031)
chr1 (160-261)||(28610454-28610555)
[»] chr4 (32 HSPs)
chr4 (20-210)||(31286972-31287162)
chr4 (20-222)||(31287884-31288086)
chr4 (20-222)||(31306349-31306551)
chr4 (20-267)||(31287428-31287675)
chr4 (17-222)||(31259918-31260123)
chr4 (20-267)||(35109442-35109689)
chr4 (17-267)||(31287197-31287447)
chr4 (35-267)||(31288127-31288359)
chr4 (20-219)||(31259693-31259892)
chr4 (20-222)||(31260149-31260351)
chr4 (29-267)||(36293955-36294193)
chr4 (17-129)||(31287653-31287765)
chr4 (20-219)||(36294459-36294658)
chr4 (17-267)||(35109667-35109917)
chr4 (17-267)||(35109895-35110145)
chr4 (17-267)||(35110123-35110373)
chr4 (17-267)||(35110351-35110601)
chr4 (17-267)||(35110579-35110829)
chr4 (17-267)||(36294639-36294889)
chr4 (17-222)||(35110807-35111012)
chr4 (23-123)||(35100597-35100697)
chr4 (23-123)||(35108989-35109089)
chr4 (20-267)||(36294867-36295114)
chr4 (20-123)||(36295239-36295342)
chr4 (35-129)||(35111053-35111147)
chr4 (35-124)||(31306592-31306681)
chr4 (182-258)||(35100528-35100604)
chr4 (182-258)||(35108920-35108996)
chr4 (20-132)||(36294318-36294430)
chr4 (20-123)||(35109214-35109317)
chr4 (167-264)||(35101844-35101941)
chr4 (32-124)||(35111278-35111370)
[»] chr8 (12 HSPs)
chr8 (20-264)||(34999807-35000051)
chr8 (20-267)||(6168481-6168728)
chr8 (17-219)||(35000032-35000234)
chr8 (35-267)||(35000506-35000738)
chr8 (23-123)||(6168853-6168953)
chr8 (23-258)||(6168946-6169181)
chr8 (35-129)||(6167935-6168029)
chr8 (182-258)||(6169174-6169250)
chr8 (167-264)||(6167800-6167897)
chr8 (20-129)||(35000263-35000372)
chr8 (20-132)||(6168160-6168272)
chr8 (182-258)||(34999741-34999817)
[»] chr6 (4 HSPs)
chr6 (20-219)||(24039444-24039643)
chr6 (20-129)||(24039306-24039415)
chr6 (160-258)||(24039860-24039958)
chr6 (23-180)||(24039710-24039867)
[»] chr7 (4 HSPs)
chr7 (23-129)||(47989844-47989950)
chr7 (20-267)||(47989934-47990181)
chr7 (23-124)||(47989621-47989722)
chr7 (182-258)||(47990171-47990247)


Alignment Details
Target: chr1 (Bit Score: 254; Significance: 1e-141; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 17 - 270
Target Start/End: Complemental strand, 28610926 - 28610673
Alignment:
Q  17 atgccctccttatcctgaatcttggccttcacgttatcaatagtatcagaactctccacctctagagtaattgtcttcccggtcaacgtcttcacaaata 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28610926 atgccctccttatcctgaatcttggccttcacgttatcaatagtatcagaactctccacctctagagtaattgtcttcccggtcaacgtcttcacaaata 28610827  T
Q  117 tctgcatcccaccgcgcaacctcagaactagatgaagcgtactctctttctggatattataatccgcaagagttcttccatcttccaactgcttccctgc 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28610826 tctgcatcccaccgcgcaacctcagaactagatgaagcgtactctctttctggatattataatccgcaagagttcttccatcttccaactgcttccctgc 28610727  T
Q  217 aaagatcaatcgttgctgatccggtggaatgccttccttgtcttgaatcttcgc 270  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28610726 aaagatcaatcgttgctgatccggtggaatgccttccttgtcttgaatcttcgc 28610673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 140 - 267
Target Start/End: Complemental strand, 28611031 - 28610904
Alignment:
Q  140 agaactagatgaagcgtactctctttctggatattataatccgcaagagttcttccatcttccaactgcttccctgcaaagatcaatcgttgctgatccg 239  Q
    ||||| ||||||||||||  ||||||||| ||||||||||| || ||||| || ||||| || |  || || || |||||||||||||| ||||||||||    
T  28611031 agaacaagatgaagcgtagactctttctgaatattataatcagcgagagtcctcccatcctcaagttgttttccagcaaagatcaatcgctgctgatccg 28610932  T
Q  240 gtggaatgccttccttgtcttgaatctt 267  Q
    |||||||||| ||||| || ||||||||    
T  28610931 gtggaatgccctccttatcctgaatctt 28610904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 160 - 261
Target Start/End: Complemental strand, 28610555 - 28610454
Alignment:
Q  160 ctctttctggatattataatccgcaagagttcttccatcttccaactgcttccctgcaaagatcaatcgttgctgatccggtggaatgccttccttgtct 259  Q
    ||||||||||||||| ||||||||||||||||| || ||||| | ||| || || || ||||| |  ||||| || || |||||||| ||||| ||||||    
T  28610555 ctctttctggatattgtaatccgcaagagttctaccgtcttctagctgttttccggcgaagatgagacgttgttggtcaggtggaattccttctttgtct 28610456  T
Q  260 tg 261  Q
    ||    
T  28610455 tg 28610454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 3e-32; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 20 - 210
Target Start/End: Original strand, 31286972 - 31287162
Alignment:
Q  20 ccctccttatcctgaatcttggccttcacgttatcaatagtatcagaactctccacctctagagtaattgtcttcccggtcaacgtcttcacaaatatct 119  Q
    |||||||||||||| ||||| || |||||||||||||| |||||||| || |||||||| |  ||||| ||||||||||| |  |||||||||||||| |    
T  31286972 ccctccttatcctgtatcttcgctttcacgttatcaatcgtatcagagctttccacctccaaggtaatagtcttcccggtaagagtcttcacaaatattt 31287071  T
Q  120 gcatcccaccgcgcaacctcagaactagatgaagcgtactctctttctggatattataatccgcaagagttcttccatcttccaactgctt 210  Q
    |||||||||| || | ||||| ||| | ||| || |||   |||||||||||||||||||| || ||||| |  |||||||||||||||||    
T  31287072 gcatcccacctcgaagcctcaaaaccaaatgcagagtagattctttctggatattataatcagccagagtacggccatcttccaactgctt 31287162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 20 - 222
Target Start/End: Original strand, 31287884 - 31288086
Alignment:
Q  20 ccctccttatcctgaatcttggccttcacgttatcaatagtatcagaactctccacctctagagtaattgtcttcccggtcaacgtcttcacaaatatct 119  Q
    ||||||||||| |||||||| || ||||| |||||||||||||| |||||||||||||| | |||||| ||||| || ||||| ||||| ||||| ||||    
T  31287884 ccctccttatcttgaatcttagctttcacattatcaatagtatctgaactctccacctccaaagtaatagtctttccagtcaaagtctttacaaaaatct 31287983  T
Q  120 gcatcccaccgcgcaacctcagaactagatgaagcgtactctctttctggatattataatccgcaagagttcttccatcttccaactgcttccctgcaaa 219  Q
    |||| ||||| |  || || || || |||||||| |||   || |||||||| |||||||| || || ||||||||||| || | ||| |||||||||||    
T  31287984 gcattccacctcttaatctaagcaccagatgaagggtagattccttctggatgttataatcagctagggttcttccatcctcgagctgtttccctgcaaa 31288083  T
Q  220 gat 222  Q
    |||    
T  31288084 gat 31288086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 20 - 222
Target Start/End: Original strand, 31306349 - 31306551
Alignment:
Q  20 ccctccttatcctgaatcttggccttcacgttatcaatagtatcagaactctccacctctagagtaattgtcttcccggtcaacgtcttcacaaatatct 119  Q
    |||||||| || |||||||| || ||||| |||||||||||||| |||||||| ||||| | |||||| ||||| || ||||| ||||| ||||||||||    
T  31306349 ccctccttgtcttgaatcttagctttcacattatcaatagtatctgaactctcaacctccaaagtaatagtctttccagtcaaagtcttaacaaatatct 31306448  T
Q  120 gcatcccaccgcgcaacctcagaactagatgaagcgtactctctttctggatattataatccgcaagagttcttccatcttccaactgcttccctgcaaa 219  Q
    |||| ||||| | ||| || || || | |||||| |||   || |||||||| |||||||| || ||  |||||||||| || | ||| || ||||||||    
T  31306449 gcattccacctctcaatctaagcaccaaatgaagggtagattccttctggatgttataatcagctaggattcttccatcctcgagctgtttacctgcaaa 31306548  T
Q  220 gat 222  Q
    |||    
T  31306549 gat 31306551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 20 - 267
Target Start/End: Original strand, 31287428 - 31287675
Alignment:
Q  20 ccctccttatcctgaatcttggccttcacgttatcaatagtatcagaactctccacctctagagtaattgtcttcccggtcaacgtcttcacaaatatct 119  Q
    ||||||||||| |||||||| || ||||| |||||||||||||| |||||||| ||||| | |||||| || || ||||| |  ||||| ||||| || |    
T  31287428 ccctccttatcttgaatcttagctttcacattatcaatagtatctgaactctcaacctccaaagtaatagtttttccggtaagggtctttacaaaaattt 31287527  T
Q  120 gcatcccaccgcgcaacctcagaactagatgaagcgtactctctttctggatattataatccgcaagagttcttccatcttccaactgcttccctgcaaa 219  Q
    |||| ||||| || | || || ||| | ||| || ||    || || |||||||||||||| ||||| || ||||||||||| |  || |||||||||||    
T  31287528 gcataccaccacgaagccgcaaaaccaaatgcagagtggattccttttggatattataatcagcaagggtccttccatcttcaagttgtttccctgcaaa 31287627  T
Q  220 gatcaatcgttgctgatccggtggaatgccttccttgtcttgaatctt 267  Q
    ||| | ||  |||||||| || || ||||||||||| || ||||||||    
T  31287628 gataagtctctgctgatcaggagggatgccttccttatcctgaatctt 31287675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 17 - 222
Target Start/End: Original strand, 31259918 - 31260123
Alignment:
Q  17 atgccctccttatcctgaatcttggccttcacgttatcaatagtatcagaactctccacctctagagtaattgtcttcccggtcaacgtcttcacaaata 116  Q
    |||||||| ||||||||||| || |||||||| |||||||| |||||||||||||| ||||| | ||| || ||||| || || |  ||||| ||||| |    
T  31259918 atgccctctttatcctgaatttttgccttcacattatcaattgtatcagaactctcaacctccaaagttatggtctttccagtaagggtcttaacaaaaa 31260017  T
Q  117 tctgcatcccaccgcgcaacctcagaactagatgaagcgtactctctttctggatattataatccgcaagagttcttccatcttccaactgcttccctgc 216  Q
    ||||||| || || || | ||||| ||| | ||| || ||   ||| |||||||| |||||||| ||||| || ||||||||||| | |||||| || ||    
T  31260018 tctgcatacccccacgaagcctcaaaaccaaatggagagtggactccttctggatgttataatcggcaagtgtccttccatcttcaagctgcttaccagc 31260117  T
Q  217 aaagat 222  Q
    ||||||    
T  31260118 aaagat 31260123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 267
Target Start/End: Original strand, 35109442 - 35109689
Alignment:
Q  20 ccctccttatcctgaatcttggccttcacgttatcaatagtatcagaactctccacctctagagtaattgtcttcccggtcaacgtcttcacaaatatct 119  Q
    |||||||| ||||| ||||||||||| || ||||||||||| || || ||||| ||||| | ||||||||| || || || |  ||||| ||||| ||||    
T  35109442 ccctccttgtcctgtatcttggccttgacattatcaatagtgtccgagctctctacctccaaagtaattgttttgcctgtgagtgtcttaacaaaaatct 35109541  T
Q  120 gcatcccaccgcgcaacctcagaactagatgaagcgtactctctttctggatattataatccgcaagagttcttccatcttccaactgcttccctgcaaa 219  Q
    |||| |||||||| |  | ||  || || ||||| ||   |||||||||||| || ||||| ||||||||||| |||||||| | |||||| || |||||    
T  35109542 gcataccaccgcgaagacgcaagacaaggtgaagagtcgactctttctggatgttgtaatcagcaagagttctgccatcttcaagctgctttccagcaaa 35109641  T
Q  220 gatcaatcgttgctgatccggtggaatgccttccttgtcttgaatctt 267  Q
     || |  |  ||||| || || |||||||| |||||||| ||||||||    
T  35109642 aatgagcctctgctggtctgggggaatgccctccttgtcctgaatctt 35109689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 17 - 267
Target Start/End: Original strand, 31287197 - 31287447
Alignment:
Q  17 atgccctccttatcctgaatcttggccttcacgttatcaatagtatcagaactctccacctctagagtaattgtcttcccggtcaacgtcttcacaaata 116  Q
    |||||||| || ||||||||||| || |||||||| ||||| ||||||||||| || ||||| | ||| |||||||| ||||| |  ||||||||||| |    
T  31287197 atgccctctttgtcctgaatctttgctttcacgttgtcaattgtatcagaactttcaacctccaaagttattgtctttccggtaagagtcttcacaaaaa 31287296  T
Q  117 tctgcatcccaccgcgcaacctcagaactagatgaagcgtactctctttctggatattataatccgcaagagttcttccatcttccaactgcttccctgc 216  Q
    ||||||| ||||| || | ||||| ||| | ||| || ||    || || || || |||||||| ||||| || ||||||||||| | |||||| || ||    
T  31287297 tctgcataccaccacgaagcctcaaaaccaaatggagggtcgattccttttgaatgttataatcagcaagggtccttccatcttcaagctgcttaccagc 31287396  T
Q  217 aaagatcaatcgttgctgatccggtggaatgccttccttgtcttgaatctt 267  Q
    |||||| |  |  |||||||| || || || || ||||| |||||||||||    
T  31287397 aaagataagcctctgctgatcgggagggataccctccttatcttgaatctt 31287447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 35 - 267
Target Start/End: Original strand, 31288127 - 31288359
Alignment:
Q  35 atcttggccttcacgttatcaatagtatcagaactctccacctctagagtaattgtcttcccggtcaacgtcttcacaaatatctgcatcccaccgcgca 134  Q
    ||||||||||| || |||||||| ||||||||    || ||||| || || ||||| || |||||||| |||||||||||||||||||| ||||| | ||    
T  31288127 atcttggccttgacattatcaattgtatcagatgattcaacctcaagggtgattgtttttccggtcaatgtcttcacaaatatctgcatgccacctctca 31288226  T
Q  135 acctcagaactagatgaagcgtactctctttctggatattataatccgcaagagttcttccatcttccaactgcttccctgcaaagatcaatcgttgctg 234  Q
    | | ||| || || ||||| ||    || || ||||| || ||||||||||| || |  ||||||||||| || || || ||||| || |  | ||||||    
T  31288227 atcgcagcacaaggtgaagggtggattccttttggatgttgtaatccgcaagggtgcggccatcttccaattgtttaccagcaaatataagcctttgctg 31288326  T
Q  235 atccggtggaatgccttccttgtcttgaatctt 267  Q
    ||| || ||||| ||||||||||||||||||||    
T  31288327 atcgggaggaataccttccttgtcttgaatctt 31288359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 20 - 219
Target Start/End: Original strand, 31259693 - 31259892
Alignment:
Q  20 ccctccttatcctgaatcttggccttcacgttatcaatagtatcagaactctccacctctagagtaattgtcttcccggtcaacgtcttcacaaatatct 119  Q
    ||||||||||| || ||||| || ||||| ||||||||||||||||| || |||||||| |  ||||| |||||||| || |  |||||||||||||| |    
T  31259693 ccctccttatcttgtatctttgctttcacattatcaatagtatcagagctttccacctccaaggtaatagtcttcccagtaagtgtcttcacaaatattt 31259792  T
Q  120 gcatcccaccgcgcaacctcagaactagatgaagcgtactctctttctggatattataatccgcaagagttcttccatcttccaactgcttccctgcaaa 219  Q
    |||| ||||| || | ||||| ||| | ||| |  |||   || ||||||||||||||||| || | ||| |  ||||| ||||||||||| || |||||    
T  31259793 gcatgccaccacgaagcctcaaaaccaaatgcaaagtagattccttctggatattataatcggccaaagtacgaccatcctccaactgctttccagcaaa 31259892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 222
Target Start/End: Original strand, 31260149 - 31260351
Alignment:
Q  20 ccctccttatcctgaatcttggccttcacgttatcaatagtatcagaactctccacctctagagtaattgtcttcccggtcaacgtcttcacaaatatct 119  Q
    ||||||||||| |||||||| || ||||| |||||||||||||| |||||||| ||||| | |||||| || || || || || ||||| ||||| || |    
T  31260149 ccctccttatcttgaatcttagctttcacattatcaatagtatctgaactctcaacctccaaagtaatagtttttccagttaaagtcttaacaaaaattt 31260248  T
Q  120 gcatcccaccgcgcaacctcagaactagatgaagcgtactctctttctggatattataatccgcaagagttcttccatcttccaactgcttccctgcaaa 219  Q
    |||| || || | ||| || || || | |||||| |||   || |||||||| |||||||| || || || ||||||||||| |  || |||||||||||    
T  31260249 gcattccgcctctcaatctaagcaccaaatgaagggtagattccttctggatgttataatcagctagggtccttccatcttctagttgtttccctgcaaa 31260348  T
Q  220 gat 222  Q
    |||    
T  31260349 gat 31260351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 29 - 267
Target Start/End: Complemental strand, 36294193 - 36293955
Alignment:
Q  29 tcctgaatcttggccttcacgttatcaatagtatcagaactctccacctctagagtaattgtcttcccggtcaacgtcttcacaaatatctgcatcccac 128  Q
    ||||| ||||||||||| || || ||||| |||||||| ||||||||||| || || |||||||| || || |  |||||||||||||| ||||| ||||    
T  36294193 tcctgtatcttggccttaacattgtcaatggtatcagagctctccacctcaagggtgattgtctttccagtgagagtcttcacaaatatttgcataccac 36294094  T
Q  129 cgcgcaacctcagaactagatgaagcgtactctctttctggatattataatccgcaagagttcttccatcttccaactgcttccctgcaaagatcaatcg 228  Q
    | || |  |  || || | ||| || ||   ||| |||||||| |||||||| ||||| || |  ||||| |||| |||||| || ||||| ||||  ||    
T  36294093 cacggagacggagcaccaaatggagggtggactccttctggatgttataatcagcaagggtacgcccatcctccagctgctttccagcaaaaatcagacg 36293994  T
Q  229 ttgctgatccggtggaatgccttccttgtcttgaatctt 267  Q
     ||||| || ||||| || ||||||||||||||||||||    
T  36293993 ctgctggtcaggtgggattccttccttgtcttgaatctt 36293955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 17 - 129
Target Start/End: Original strand, 31287653 - 31287765
Alignment:
Q  17 atgccctccttatcctgaatcttggccttcacgttatcaatagtatcagaactctccacctctagagtaattgtcttcccggtcaacgtcttcacaaata 116  Q
    ||||| ||||||||||||||||| || ||||| |||||||||||||| |||||||| ||||| | |||||| || || ||||| |  ||||| ||||| |    
T  31287653 atgccttccttatcctgaatcttagctttcacattatcaatagtatctgaactctcaacctccaaagtaatagtttttccggtaagggtctttacaaaaa 31287752  T
Q  117 tctgcatcccacc 129  Q
    | ||||| |||||    
T  31287753 tttgcataccacc 31287765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 219
Target Start/End: Complemental strand, 36294658 - 36294459
Alignment:
Q  20 ccctccttatcctgaatcttggccttcacgttatcaatagtatcagaactctccacctctagagtaattgtcttcccggtcaacgtcttcacaaatatct 119  Q
    |||||||| || || |||||||||||||| || ||||| || || || ||||| ||||| | |||||||||||| || || |  ||||||||||| ||||    
T  36294658 ccctccttgtcttgtatcttggccttcacattgtcaattgtgtccgagctctctacctccaaagtaattgtcttgccagtaagagtcttcacaaaaatct 36294559  T
Q  120 gcatcccaccgcgcaacctcagaactagatgaagcgtactctctttctggatattataatccgcaagagttcttccatcttccaactgcttccctgcaaa 219  Q
    |||| ||||| || |  | ||  || || ||||| ||   |||||||||||| || ||||| ||||||||||| |||||||| | |||||| || |||||    
T  36294558 gcataccaccacgaagacgcaagacaaggtgaagagttgactctttctggatgttgtaatcagcaagagttctgccatcttcaagctgctttccagcaaa 36294459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 267
Target Start/End: Original strand, 35109667 - 35109917
Alignment:
Q  17 atgccctccttatcctgaatcttggccttcacgttatcaatagtatcagaactctccacctctagagtaattgtcttcccggtcaacgtcttcacaaata 116  Q
    ||||||||||| ||||||||||| ||||| || || ||||| || || || ||||| ||||| | |||||||||||| || || |  ||||| ||||| |    
T  35109667 atgccctccttgtcctgaatcttagcctttacattgtcaatcgtgtccgagctctcaacctccaaagtaattgtctttcctgtaagggtctttacaaaaa 35109766  T
Q  117 tctgcatcccaccgcgcaacctcagaactagatgaagcgtactctctttctggatattataatccgcaagagttcttccatcttccaactgcttccctgc 216  Q
    ||||||| ||||| || |  | ||  || || ||||| ||   |||||||||||| || ||||| ||||||||||| |||||||| | ||| || || ||    
T  35109767 tctgcataccaccacgaagacgcaagacaaggtgaagagttgactctttctggatgttgtaatcagcaagagttctgccatcttcaagctgttttccagc 35109866  T
Q  217 aaagatcaatcgttgctgatccggtggaatgccttccttgtcttgaatctt 267  Q
    ||| || |  |  ||||| || || |||||||| |||||||| ||||||||    
T  35109867 aaaaatgagcctctgctggtctgggggaatgccctccttgtcctgaatctt 35109917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 267
Target Start/End: Original strand, 35109895 - 35110145
Alignment:
Q  17 atgccctccttatcctgaatcttggccttcacgttatcaatagtatcagaactctccacctctagagtaattgtcttcccggtcaacgtcttcacaaata 116  Q
    ||||||||||| ||||||||||| ||||| || || ||||| || || || ||||| ||||| | |||||||||||| || || |  ||||| ||||| |    
T  35109895 atgccctccttgtcctgaatcttagcctttacattgtcaatcgtgtccgagctctcaacctccaaagtaattgtctttcctgtaagggtctttacaaaaa 35109994  T
Q  117 tctgcatcccaccgcgcaacctcagaactagatgaagcgtactctctttctggatattataatccgcaagagttcttccatcttccaactgcttccctgc 216  Q
    ||||||| ||||| || |  | ||  || || ||||| ||   |||||||||||| || ||||| ||||||||||| |||||||| | ||| || || ||    
T  35109995 tctgcataccaccacgaagacgcaagacaaggtgaagagttgactctttctggatgttgtaatcagcaagagttctgccatcttcaagctgttttccagc 35110094  T
Q  217 aaagatcaatcgttgctgatccggtggaatgccttccttgtcttgaatctt 267  Q
    ||| || |  |  ||||| || || |||||||| |||||||| ||||||||    
T  35110095 aaaaatgagcctctgctggtctgggggaatgccctccttgtcctgaatctt 35110145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 267
Target Start/End: Original strand, 35110123 - 35110373
Alignment:
Q  17 atgccctccttatcctgaatcttggccttcacgttatcaatagtatcagaactctccacctctagagtaattgtcttcccggtcaacgtcttcacaaata 116  Q
    ||||||||||| ||||||||||| ||||| || || ||||| || || || ||||| ||||| | |||||||||||| || || |  ||||| ||||| |    
T  35110123 atgccctccttgtcctgaatcttagcctttacattgtcaatcgtgtccgagctctcaacctccaaagtaattgtctttcctgtaagggtctttacaaaaa 35110222  T
Q  117 tctgcatcccaccgcgcaacctcagaactagatgaagcgtactctctttctggatattataatccgcaagagttcttccatcttccaactgcttccctgc 216  Q
    ||||||| ||||| || |  | ||  || || ||||| ||   |||||||||||| || ||||| ||||||||||| |||||||| | ||| || || ||    
T  35110223 tctgcataccaccacgaagacgcaagacaaggtgaagagttgactctttctggatgttgtaatcagcaagagttctgccatcttcaagctgttttccagc 35110322  T
Q  217 aaagatcaatcgttgctgatccggtggaatgccttccttgtcttgaatctt 267  Q
    ||| || |  |  ||||| || || |||||||| |||||||| ||||||||    
T  35110323 aaaaatgagcctctgctggtctgggggaatgccctccttgtcctgaatctt 35110373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 267
Target Start/End: Original strand, 35110351 - 35110601
Alignment:
Q  17 atgccctccttatcctgaatcttggccttcacgttatcaatagtatcagaactctccacctctagagtaattgtcttcccggtcaacgtcttcacaaata 116  Q
    ||||||||||| ||||||||||| ||||| || || ||||| || || || ||||| ||||| | |||||||||||| || || |  ||||| ||||| |    
T  35110351 atgccctccttgtcctgaatcttagcctttacattgtcaatcgtgtccgagctctcaacctccaaagtaattgtctttcctgtaagggtctttacaaaaa 35110450  T
Q  117 tctgcatcccaccgcgcaacctcagaactagatgaagcgtactctctttctggatattataatccgcaagagttcttccatcttccaactgcttccctgc 216  Q
    ||||||| ||||| || |  | ||  || || ||||| ||   |||||||||||| || ||||| ||||||||||| |||||||| | ||| || || ||    
T  35110451 tctgcataccaccacgaagacgcaagacaaggtgaagagttgactctttctggatgttgtaatcagcaagagttctgccatcttcaagctgttttccagc 35110550  T
Q  217 aaagatcaatcgttgctgatccggtggaatgccttccttgtcttgaatctt 267  Q
    ||| || |  |  ||||| || || |||||||| |||||||| ||||||||    
T  35110551 aaaaatgagcctctgctggtctgggggaatgccctccttgtcctgaatctt 35110601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 267
Target Start/End: Original strand, 35110579 - 35110829
Alignment:
Q  17 atgccctccttatcctgaatcttggccttcacgttatcaatagtatcagaactctccacctctagagtaattgtcttcccggtcaacgtcttcacaaata 116  Q
    ||||||||||| ||||||||||| ||||| || || ||||| || || || ||||| ||||| | |||||||||||| || || |  ||||| ||||| |    
T  35110579 atgccctccttgtcctgaatcttagcctttacattgtcaatcgtgtccgagctctcaacctccaaagtaattgtctttcctgtaagggtctttacaaaaa 35110678  T
Q  117 tctgcatcccaccgcgcaacctcagaactagatgaagcgtactctctttctggatattataatccgcaagagttcttccatcttccaactgcttccctgc 216  Q
    ||||||| ||||| || |  | ||  || || ||||| ||   |||||||||||| || ||||| ||||||||||| |||||||| | ||| || || ||    
T  35110679 tctgcataccaccacgaagacgcaagacaaggtgaagagttgactctttctggatgttgtaatcagcaagagttctgccatcttcaagctgttttccagc 35110778  T
Q  217 aaagatcaatcgttgctgatccggtggaatgccttccttgtcttgaatctt 267  Q
    ||| || |  |  ||||| || || |||||||| |||||||| ||||||||    
T  35110779 aaaaatgagcctctgctggtctgggggaatgccctccttgtcctgaatctt 35110829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 267
Target Start/End: Complemental strand, 36294889 - 36294639
Alignment:
Q  17 atgccctccttatcctgaatcttggccttcacgttatcaatagtatcagaactctccacctctagagtaattgtcttcccggtcaacgtcttcacaaata 116  Q
    ||||||||||| ||| ||||||| ||||| || || ||||| || || || ||||| ||||| | |||||| || || || || |  ||||| ||||| |    
T  36294889 atgccctccttgtccagaatcttagcctttacattgtcaattgtgtctgagctctcaacctccaaagtaatcgtttttccagttagggtcttaacaaaaa 36294790  T
Q  117 tctgcatcccaccgcgcaacctcagaactagatgaagcgtactctctttctggatattataatccgcaagagttcttccatcttccaactgcttccctgc 216  Q
    ||||||| ||||| || | || ||  || |||||||| ||   ||||||||||||||||||||| || |||||||  || ||||| |  ||||| || ||    
T  36294789 tctgcataccaccacgaagccgcaagacaagatgaagagtcgactctttctggatattataatcagccagagttcgaccgtcttcaagttgctttccagc 36294690  T
Q  217 aaagatcaatcgttgctgatccggtggaatgccttccttgtcttgaatctt 267  Q
    ||| ||||| | |||||| || || ||||| || ||||||||||| |||||    
T  36294689 aaaaatcaacctttgctggtctgggggaataccctccttgtcttgtatctt 36294639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 222
Target Start/End: Original strand, 35110807 - 35111012
Alignment:
Q  17 atgccctccttatcctgaatcttggccttcacgttatcaatagtatcagaactctccacctctagagtaattgtcttcccggtcaacgtcttcacaaata 116  Q
    ||||||||||| ||||||||||| ||||| || || ||||| || || || ||||| ||||| | |||||||||||| || || |  ||||| ||||| |    
T  35110807 atgccctccttgtcctgaatcttagcctttacattgtcaatcgtgtccgagctctctacctccaaagtaattgtctttcctgtaagggtctttacaaaaa 35110906  T
Q  117 tctgcatcccaccgcgcaacctcagaactagatgaagcgtactctctttctggatattataatccgcaagagttcttccatcttccaactgcttccctgc 216  Q
    ||||||| ||||| || |  | || ||| |||||||| ||   |||||||||||| |||||||| || |  ||||| |||||||| | ||| || || ||    
T  35110907 tctgcataccaccacgaagtcgcaaaacgagatgaagagttgactctttctggatgttataatcggccaatgttctgccatcttcaagctgttttccagc 35111006  T
Q  217 aaagat 222  Q
    ||||||    
T  35111007 aaagat 35111012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 23 - 123
Target Start/End: Original strand, 35100597 - 35100697
Alignment:
Q  23 tccttatcctgaatcttggccttcacgttatcaatagtatcagaactctccacctctagagtaattgtcttcccggtcaacgtcttcacaaatatctgca 122  Q
    ||||| ||||| || || |||||||| |||||||| || || ||||| || |||||||  || || ||||| |||||||||||||||||||| |||||||    
T  35100597 tccttgtcctggatttttgccttcacattatcaattgtgtctgaactttctacctctaaggtgatggtcttaccggtcaacgtcttcacaaagatctgca 35100696  T
Q  123 t 123  Q
    |    
T  35100697 t 35100697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 23 - 123
Target Start/End: Original strand, 35108989 - 35109089
Alignment:
Q  23 tccttatcctgaatcttggccttcacgttatcaatagtatcagaactctccacctctagagtaattgtcttcccggtcaacgtcttcacaaatatctgca 122  Q
    ||||| ||||| || || |||||||| |||||||| || || ||||| || |||||||  || || ||||| |||||||||||||||||||| |||||||    
T  35108989 tccttgtcctggatttttgccttcacattatcaattgtgtctgaactttctacctctaaggtgatggtcttaccggtcaacgtcttcacaaagatctgca 35109088  T
Q  123 t 123  Q
    |    
T  35109089 t 35109089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 20 - 267
Target Start/End: Complemental strand, 36295114 - 36294867
Alignment:
Q  20 ccctccttatcctgaatcttggccttcacgttatcaatagtatcagaactctccacctctagagtaattgtcttcccggtcaacgtcttcacaaatatct 119  Q
    |||||||||||||| || || ||||| || |||||||| || ||||| || |||||||| |  ||||| ||||| || ||||| ||||||||||| ||||    
T  36295114 ccctccttatcctgtattttagccttaacattatcaatggtgtcagagctttccacctccaatgtaatggtctttcctgtcaaagtcttcacaaagatct 36295015  T
Q  120 gcatcccaccgcgcaacctcagaactagatgaagcgtactctctttctggatattataatccg-caagagttcttccatcttccaactgcttccctgcaa 218  Q
    |||| || || | ||  |  || || |||||||| ||    || |||||||| |||||||| | |||| || ||||||||||| | |||||| || ||||    
T  36295014 gcatgcctcccctcagacgaaggacaagatgaagggttgattccttctggatgttataatctgacaag-gtccttccatcttcaagctgctttccagcaa 36294916  T
Q  219 agatcaatcgttgctgatccggtggaatgccttccttgtcttgaatctt 267  Q
    | ||||| | |||||| || || |||||||| ||||||||  |||||||    
T  36294915 aaatcaacctttgctggtctggaggaatgccctccttgtccagaatctt 36294867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 123
Target Start/End: Complemental strand, 36295342 - 36295239
Alignment:
Q  20 ccctccttatcctgaatcttggccttcacgttatcaatagtatcagaactctccacctctagagtaattgtcttcccggtcaacgtcttcacaaatatct 119  Q
    |||||||| ||||| || || ||||| || ||||| ||||| || ||||| ||||||||||  || || ||||| |||||||| ||||||||||| ||||    
T  36295342 ccctccttgtcctggatttttgccttgacattatcgatagtgtctgaactttccacctctaaggtgatggtctttccggtcaatgtcttcacaaagatct 36295243  T
Q  120 gcat 123  Q
    ||||    
T  36295242 gcat 36295239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 35 - 129
Target Start/End: Original strand, 35111053 - 35111147
Alignment:
Q  35 atcttggccttcacgttatcaatagtatcagaactctccacctctagagtaattgtcttcccggtcaacgtcttcacaaatatctgcatcccacc 129  Q
    ||||||||||| || || ||||| |||||||| ||||||||||| || || |||||||| || || |  |||||||||||||| ||||| |||||    
T  35111053 atcttggccttaacattgtcaatggtatcagagctctccacctcaagggtgattgtctttccagtgagagtcttcacaaatatttgcataccacc 35111147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 124
Target Start/End: Original strand, 31306592 - 31306681
Alignment:
Q  35 atcttggccttcacgttatcaatagtatcagaactctccacctctagagtaattgtcttcccggtcaacgtcttcacaaatatctgcatc 124  Q
    ||||||||||| || |||||||| ||||| |||||||| ||||| ||||| || || || || ||||| || |||||||| |||||||||    
T  31306592 atcttggccttgacattatcaattgtatcggaactctctacctcaagagtgatggtttttcctgtcaatgttttcacaaagatctgcatc 31306681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 182 - 258
Target Start/End: Original strand, 35100528 - 35100604
Alignment:
Q  182 gcaagagttcttccatcttccaactgcttccctgcaaagatcaatcgttgctgatccggtggaatgccttccttgtc 258  Q
    ||||| || |||||||| ||||| |||||||| ||||||||||| |  |||||||| ||||| || |||||||||||    
T  35100528 gcaagggtccttccatcctccaattgcttcccagcaaagatcaacctctgctgatctggtgggattccttccttgtc 35100604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 182 - 258
Target Start/End: Original strand, 35108920 - 35108996
Alignment:
Q  182 gcaagagttcttccatcttccaactgcttccctgcaaagatcaatcgttgctgatccggtggaatgccttccttgtc 258  Q
    ||||| || |||||||| ||||| |||||||| ||||||||||| |  |||||||| ||||| || |||||||||||    
T  35108920 gcaagggtccttccatcctccaattgcttcccagcaaagatcaacctctgctgatctggtgggattccttccttgtc 35108996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 132
Target Start/End: Complemental strand, 36294430 - 36294318
Alignment:
Q  20 ccctccttatcctgaatcttggccttcacgttatcaatagtatcagaactctccacctctagagtaattgtcttcccggtcaacgtcttcacaaatatct 119  Q
    ||||| || ||||||||||| ||||| || || ||||| ||||| || ||||| ||||| | |||||||||||| || || |  ||||| ||||| ||||    
T  36294430 ccctctttgtcctgaatctttgcctttacattgtcaatcgtatctgagctctctacctccaaagtaattgtctttcctgtaagggtctttacaaaaatct 36294331  T
Q  120 gcatcccaccgcg 132  Q
    |||| ||||||||    
T  36294330 gcataccaccgcg 36294318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 123
Target Start/End: Original strand, 35109214 - 35109317
Alignment:
Q  20 ccctccttatcctgaatcttggccttcacgttatcaatagtatcagaactctccacctctagagtaattgtcttcccggtcaacgtcttcacaaatatct 119  Q
    |||||||||||||| || || ||||| || |||||||| || || || || |||||||| |  ||||| ||||| || ||||| ||||||||||| ||||    
T  35109214 ccctccttatcctgtatttttgccttaacattatcaatggtgtctgagctttccacctccaatgtaatggtctttcctgtcaaagtcttcacaaagatct 35109313  T
Q  120 gcat 123  Q
    ||||    
T  35109314 gcat 35109317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 167 - 264
Target Start/End: Original strand, 35101844 - 35101941
Alignment:
Q  167 tggatattataatccgcaagagttcttccatcttccaactgcttccctgcaaagatcaatcgttgctgatccggtggaatgccttccttgtcttgaat 264  Q
    ||||| |||||||| ||||| || |  ||||| ||||||||||| || ||||| ||||  || ||||| || ||||| || |||||||||||||||||    
T  35101844 tggatgttataatcagcaagggtacgcccatcctccaactgcttgccagcaaaaatcagacgctgctggtctggtgggattccttccttgtcttgaat 35101941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 124
Target Start/End: Original strand, 35111278 - 35111370
Alignment:
Q  32 tgaatcttggccttcacgttatcaatagtatcagaactctccacctctagagtaattgtcttcccggtcaacgtcttcacaaatatctgcatc 124  Q
    |||||||||||||| || || ||||| ||||| || ||||||||||| || || |||||||| || || |  ||||||||||| || ||||||    
T  35111278 tgaatcttggccttaacattgtcaattgtatcggagctctccacctcaagggtgattgtctttcctgtgagagtcttcacaaagatttgcatc 35111370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 20 - 264
Target Start/End: Original strand, 34999807 - 35000051
Alignment:
Q  20 ccctccttatcctgaatcttggccttcacgttatcaatagtatcagaactctccacctctagagtaattgtcttcccggtcaacgtcttcacaaatatct 119  Q
    |||||||| ||||| || || ||||| ||||||||||| || || ||||| || |||||||| ||||| ||||| |||||||| ||||||||||| ||||    
T  34999807 ccctccttgtcctgtatttttgcctttacgttatcaattgtgtctgaactttctacctctagggtaatggtctttccggtcaatgtcttcacaaagatct 34999906  T
Q  120 gcatcccaccgcgcaacctcagaactagatgaagcgtactctctttctggatattataatccgcaagagttcttccatcttccaactgcttccctgcaaa 219  Q
    |||| || || | ||| |  || || || ||||| |||  ||||||||| || || ||||| |||||||| |  |||||||| | |||||| || |||||    
T  34999907 gcatacctcccctcaaacgaaggacaaggtgaagggtagactctttctgaatgttgtaatcagcaagagtccggccatcttcgagctgctttccagcaaa 35000006  T
Q  220 gatcaatcgttgctgatccggtggaatgccttccttgtcttgaat 264  Q
     |||||||||||||| || || |||||||| |||||||| |||||    
T  35000007 aatcaatcgttgctggtctgggggaatgccctccttgtcctgaat 35000051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 267
Target Start/End: Complemental strand, 6168728 - 6168481
Alignment:
Q  20 ccctccttatcctgaatcttggccttcacgttatcaatagtatcagaactctccacctctagagtaattgtcttcccggtcaacgtcttcacaaatatct 119  Q
    |||||||||||||| || || ||||| || ||||| || || || || || |||||||| |  ||||| ||||| || ||||| ||||||||||| ||||    
T  6168728 ccctccttatcctgtatttttgccttaacattatcgatggtgtctgagctttccacctccaatgtaatggtctttcctgtcaaagtcttcacaaagatct 6168629  T
Q  120 gcatcccaccgcgcaacctcagaactagatgaagcgtactctctttctggatattataatccgcaagagttcttccatcttccaactgcttccctgcaaa 219  Q
    |||| || || | ||| |  || || |||||||| ||    ||||||||||| |||||||| || |  ||||| |||||||| | |||||| || |||||    
T  6168628 gcatgcctcccctcaaacgaaggacaagatgaagagtggattctttctggatgttataatctgccaaggttctgccatcttcaagctgctttccagcaaa 6168529  T
Q  220 gatcaatcgttgctgatccggtggaatgccttccttgtcttgaatctt 267  Q
     ||||| | |||||| || || ||||||||||||||||| ||||||||    
T  6168528 aatcaacctttgctggtctgggggaatgccttccttgtcctgaatctt 6168481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 219
Target Start/End: Original strand, 35000032 - 35000234
Alignment:
Q  17 atgccctccttatcctgaatcttggccttcacgttatcaatagtatcagaactctccacctctagagtaattgtcttcccggtcaacgtcttcacaaata 116  Q
    ||||||||||| |||||||| || |||||||| || |||||||| || || ||||| ||||| | ||||||||| || || || |  |||||||| || |    
T  35000032 atgccctccttgtcctgaattttagccttcacattgtcaatagtgtctgagctctctacctccaaagtaattgttttgccagtaagagtcttcacgaaaa 35000131  T
Q  117 tctgcatcccaccgcgcaacctcagaactagatgaagcgtactctctttctggatattataatccgcaagagttcttccatcttccaactgcttccctgc 216  Q
    ||||||| ||||| || |  | || ||| || ||||| ||   |||||||||||| || ||||| ||||||||||| |||||||| | |||||| || ||    
T  35000132 tctgcataccaccacgaagacgcaaaacaaggtgaagagttgactctttctggatgttgtaatcagcaagagttctgccatcttcgagctgctttccagc 35000231  T
Q  217 aaa 219  Q
    |||    
T  35000232 aaa 35000234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 35 - 267
Target Start/End: Original strand, 35000506 - 35000738
Alignment:
Q  35 atcttggccttcacgttatcaatagtatcagaactctccacctctagagtaattgtcttcccggtcaacgtcttcacaaatatctgcatcccaccgcgca 134  Q
    ||||||||||| || || ||||| || ||||| ||||||||||| || ||||||||||| || || |  |||||||||||||| ||||| ||||| || |    
T  35000506 atcttggccttgacattgtcaatggtgtcagagctctccacctcaagggtaattgtctttcctgtgagagtcttcacaaatatttgcataccaccacgga 35000605  T
Q  135 acctcagaactagatgaagcgtactctctttctggatattataatccgcaagagttcttccatcttccaactgcttccctgcaaagatcaatcgttgctg 234  Q
      |  || || | |||||| |||  ||| || ||||| |||||||||||||| || |  ||||| ||||  || || || ||||| || |  || |||||    
T  35000606 gacggagcaccaaatgaagggtagactccttttggatgttataatccgcaagggtacgcccatcctccagttgtttgccagcaaaaatgagacgctgctg 35000705  T
Q  235 atccggtggaatgccttccttgtcttgaatctt 267  Q
    ||| ||||| || ||||||||||||||||||||    
T  35000706 atcaggtgggatcccttccttgtcttgaatctt 35000738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 23 - 123
Target Start/End: Complemental strand, 6168953 - 6168853
Alignment:
Q  23 tccttatcctgaatcttggccttcacgttatcaatagtatcagaactctccacctctagagtaattgtcttcccggtcaacgtcttcacaaatatctgca 122  Q
    ||||| ||||| || || |||||||| |||||||| || || ||||| || |||||||  || || ||||| |||||||||||||||||||| |||||||    
T  6168953 tccttgtcctggatttttgccttcacattatcaattgtgtctgaactttctacctctaaggtgatggtcttaccggtcaacgtcttcacaaagatctgca 6168854  T
Q  123 t 123  Q
    |    
T  6168853 t 6168853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 258
Target Start/End: Complemental strand, 6169181 - 6168946
Alignment:
Q  23 tccttatcctgaatcttggccttcacgttatcaatagtatcagaactctccacctctagagtaattgtcttcccggtcaacgtcttcacaaatatctgca 122  Q
    ||||| ||||| || || |||||||| |||||||| || || ||||| || |||||||  || || ||||| |||||||||||||| ||||| |||||||    
T  6169181 tccttgtcctggatttttgccttcacattatcaattgtgtctgaactttctacctctaaggtgatggtcttaccggtcaacgtctttacaaagatctgca 6169082  T
Q  123 tcccaccgcgcaacctcagaactagatgaagcgtactctctttctggatattataatccgcaagagttcttccatcttccaactgcttccctgcaaagat 222  Q
    | || || | ||  |  || || || ||||| ||   ||||||||| || || ||||| || | ||| |  |||||||| | ||||||||| ||||||||    
T  6169081 tacctcccctcagacgaaggacaaggtgaagggtggactctttctgaatgttgtaatcagccaaagtccggccatcttcaagctgcttcccagcaaagat 6168982  T
Q  223 caatcgttgctgatccggtggaatgccttccttgtc 258  Q
    ||| |  |||||||| ||||| || |||||||||||    
T  6168981 caacctctgctgatctggtgggattccttccttgtc 6168946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 35 - 129
Target Start/End: Complemental strand, 6168029 - 6167935
Alignment:
Q  35 atcttggccttcacgttatcaatagtatcagaactctccacctctagagtaattgtcttcccggtcaacgtcttcacaaatatctgcatcccacc 129  Q
    ||||||||||| || || ||||| |||||||| ||||||||||| || ||||| ||||| || || |  |||||||||||||| ||||| |||||    
T  6168029 atcttggccttaacattgtcaatggtatcagagctctccacctcaagggtaatcgtctttccagtgagagtcttcacaaatatttgcataccacc 6167935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 182 - 258
Target Start/End: Complemental strand, 6169250 - 6169174
Alignment:
Q  182 gcaagagttcttccatcttccaactgcttccctgcaaagatcaatcgttgctgatccggtggaatgccttccttgtc 258  Q
    ||||| || |||||||| ||||| |||||||| ||||||||||| |  |||||||| ||||| || |||||||||||    
T  6169250 gcaagggtccttccatcctccaattgcttcccagcaaagatcaacctctgctgatctggtgggattccttccttgtc 6169174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 167 - 264
Target Start/End: Complemental strand, 6167897 - 6167800
Alignment:
Q  167 tggatattataatccgcaagagttcttccatcttccaactgcttccctgcaaagatcaatcgttgctgatccggtggaatgccttccttgtcttgaat 264  Q
    ||||| |||||||| ||||| || |  ||||| |||| |||||| || ||||| |||| ||| ||||| || ||||| || |||||||||||||||||    
T  6167897 tggatgttataatcagcaagggtacgcccatcctccagctgcttgccagcaaaaatcagtcgctgctggtctggtgggattccttccttgtcttgaat 6167800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 129
Target Start/End: Original strand, 35000263 - 35000372
Alignment:
Q  20 ccctccttatcctgaatcttggccttcacgttatcaatagtatcagaactctccacctctagagtaattgtcttcccggtcaacgtcttcacaaatatct 119  Q
    ||||| || ||||| ||||| |||||||| || ||||| || || || ||||| ||||| | |||||||||||| || || |  ||||||||||| ||||    
T  35000263 ccctctttgtcctgtatcttagccttcacattgtcaattgtgtccgagctctctacctccaaagtaattgtctttcctgtaagggtcttcacaaaaatct 35000362  T
Q  120 gcatcccacc 129  Q
    |||| |||||    
T  35000363 gcataccacc 35000372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 132
Target Start/End: Complemental strand, 6168272 - 6168160
Alignment:
Q  20 ccctccttatcctgaatcttggccttcacgttatcaatagtatcagaactctccacctctagagtaattgtcttcccggtcaacgtcttcacaaatatct 119  Q
    |||||||| || || |||||||||||||| || ||||| || || || ||||| ||||| | |||||| ||||| || || |  ||||| ||||| ||||    
T  6168272 ccctccttgtcttgtatcttggccttcacattgtcaattgtgtccgagctctctacctccaaagtaatagtctttcctgtaagggtcttaacaaaaatct 6168173  T
Q  120 gcatcccaccgcg 132  Q
    |||| ||||||||    
T  6168172 gcataccaccgcg 6168160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 258
Target Start/End: Original strand, 34999741 - 34999817
Alignment:
Q  182 gcaagagttcttccatcttccaactgcttccctgcaaagatcaatcgttgctgatccggtggaatgccttccttgtc 258  Q
    ||||| || |||||||| || ||||||||||| ||||||||||| |  |||||||| ||||| || || ||||||||    
T  34999741 gcaagggtccttccatcctctaactgcttcccagcaaagatcaacctctgctgatctggtgggattccctccttgtc 34999817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 219
Target Start/End: Complemental strand, 24039643 - 24039444
Alignment:
Q  20 ccctccttatcctgaatcttggccttcacgttatcaatagtatcagaactctccacctctagagtaattgtcttcccggtcaacgtcttcacaaatatct 119  Q
    |||||||| ||||| |||||||||||||| || ||||||||||| || ||||| ||||| | ||||||||| || ||||| |  ||||||||||| ||||    
T  24039643 ccctccttgtcctgtatcttggccttcacattgtcaatagtatctgagctctctacctccaaagtaattgtttttccggtgagggtcttcacaaaaatct 24039544  T
Q  120 gcatcccaccgcgcaacctcagaactagatgaagcgtactctctttctggatattataatccgcaagagttcttccatcttccaactgcttccctgcaaa 219  Q
    |||| ||||| || |  | ||  || || ||||| ||   |||||| ||||| || ||||| ||||||||||| |||||||| | |||||| || |||||    
T  24039543 gcataccaccacgaaggcgcaagacaaggtgaagagttgactctttttggatgttgtaatcggcaagagttctgccatcttcaagctgctttccagcaaa 24039444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 20 - 129
Target Start/End: Complemental strand, 24039415 - 24039306
Alignment:
Q  20 ccctccttatcctgaatcttggccttcacgttatcaatagtatcagaactctccacctctagagtaattgtcttcccggtcaacgtcttcacaaatatct 119  Q
    |||||||| |||||||||||||| || || ||||||||||||||||| ||||||||||| || || |||||||| || || |  ||||| || || || |    
T  24039415 ccctccttgtcctgaatcttggctttgacattatcaatagtatcagagctctccacctcaagggtgattgtctttccagtgagagtcttgacgaagattt 24039316  T
Q  120 gcatcccacc 129  Q
    ||||||||||    
T  24039315 gcatcccacc 24039306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 258
Target Start/End: Complemental strand, 24039958 - 24039860
Alignment:
Q  160 ctctttctggatattataatccgcaagagttcttccatcttccaactgcttccctgcaaagatcaatcgttgctgatccggtggaatgccttccttgtc 258  Q
    ||||||||| || || || || ||||| ||||||||||| ||||| |||||||| ||||||||||| |  || ||||| ||||| || |||||||||||    
T  24039958 ctctttctgaatgttgtagtcagcaagggttcttccatcctccaattgcttcccagcaaagatcaacctctgttgatctggtgggattccttccttgtc 24039860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 23 - 180
Target Start/End: Complemental strand, 24039867 - 24039710
Alignment:
Q  23 tccttatcctgaatcttggccttcacgttatcaatagtatcagaactctccacctctagagtaattgtcttcccggtcaacgtcttcacaaatatctgca 122  Q
    ||||| ||||| || || ||||| || |||||||| || || ||||| |||||||| |  ||||| ||||| || ||||| ||||||||||| |||||||    
T  24039867 tccttgtcctggatttttgccttaacattatcaatggtgtctgaactttccacctccaatgtaatggtctttcctgtcaaagtcttcacaaagatctgca 24039768  T
Q  123 tcccaccgcgcaacctcagaactagatgaagcgtactctctttctggatattataatc 180  Q
    | || || | ||| |  ||||| |||||||| ||    || |||||||||||||||||    
T  24039767 tacctcccctcaaacgaagaacaagatgaagggtggattccttctggatattataatc 24039710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 129
Target Start/End: Complemental strand, 47989950 - 47989844
Alignment:
Q  23 tccttatcctgaatcttggccttcacgttatcaatagtatcagaactctccacctctagagtaattgtcttcccggtcaacgtcttcacaaatatctgca 122  Q
    ||||| || |||||||||||||| || || ||||| ||||| || ||||||||||| ||||| ||||| || || || |  ||||||||||| || ||||    
T  47989950 tccttgtcttgaatcttggccttgacattgtcaattgtatcggagctctccacctcaagagtgattgtttttcctgtgagagtcttcacaaagatttgca 47989851  T
Q  123 tcccacc 129  Q
    |||||||    
T  47989850 tcccacc 47989844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 267
Target Start/End: Complemental strand, 47990181 - 47989934
Alignment:
Q  20 ccctccttatcctgaatcttggccttcacgttatcaatagtatcagaactctccacctctagagtaattgtcttcccggtcaacgtcttcacaaatatct 119  Q
    |||||||| ||||| || || ||||| || || ||||| || || || ||||| ||||| | |||||||||||| || || |  || || ||||| ||||    
T  47990181 ccctccttgtcctgtattttagcctttacattgtcaatcgtgtccgagctctctacctccaaagtaattgtctttcctgtaagggtttttacaaaaatct 47990082  T
Q  120 gcatcccaccgcgcaacctcagaactagatgaagcgtactctctttctggatattataatccgcaagagttcttccatcttccaactgcttccctgcaaa 219  Q
    |||| ||||| || |  | || ||| |||||||| ||   |||||||||||| |||||||| || |  ||||| |||||||| | ||| || || |||||    
T  47990081 gcataccaccacgaagtcgcaaaacgagatgaagagttgactctttctggatgttataatcggccaatgttctgccatcttcaagctgttttccagcaaa 47989982  T
Q  220 gatcaatcgttgctgatccggtggaatgccttccttgtcttgaatctt 267  Q
    ||| |  |  ||||| || ||||| || ||||||||||||||||||||    
T  47989981 gatgagcctctgctggtcaggtgggatcccttccttgtcttgaatctt 47989934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 23 - 124
Target Start/End: Complemental strand, 47989722 - 47989621
Alignment:
Q  23 tccttatcctgaatcttggccttcacgttatcaatagtatcagaactctccacctctagagtaattgtcttcccggtcaacgtcttcacaaatatctgca 122  Q
    ||||| || |||||||||||||| || || ||||| ||||| || ||||||||||| || || |||||||| || || |  ||||||||||| || ||||    
T  47989722 tccttgtcttgaatcttggccttaacattgtcaattgtatcggagctctccacctcaagggtgattgtctttcctgtgagagtcttcacaaagatttgca 47989623  T
Q  123 tc 124  Q
    ||    
T  47989622 tc 47989621  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 258
Target Start/End: Complemental strand, 47990247 - 47990171
Alignment:
Q  182 gcaagagttcttccatcttccaactgcttccctgcaaagatcaatcgttgctgatccggtggaatgccttccttgtc 258  Q
    ||||| || |||||||| ||||| |||||||| ||||||||||| |  |||||||| ||||| || || ||||||||    
T  47990247 gcaagggtccttccatcctccaattgcttcccagcaaagatcaacctctgctgatctggtgggattccctccttgtc 47990171  T

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