View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10346_low_4 (Length: 662)
Name: NF10346_low_4
Description: NF10346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10346_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 477; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 163 - 651
Target Start/End: Complemental strand, 7564034 - 7563546
Alignment:
| Q |
163 |
gggagcaagaatctcacaatcctcatgaagataagcaagccctttagcagaaccaattgcgatcctcattctcgtcggccaatccatggtaggacgaccc |
262 |
Q |
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| T |
7564034 |
gggagcaagaatctcacaatcctcatgaagataagcaagccctttagcagaaccaattgcgatcctcattctcgtcggccaatccatggtaggacgaccc |
7563935 |
T |
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| Q |
263 |
tttccgtggagatgatactccaatgtgttattggaaataaattcatagaccaacattctttggccaccagaaatacaatatccaacaagtgaaacaagat |
362 |
Q |
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| T |
7563934 |
tttccgtggagatgatactccaatgtgttattggaaataaattcatagaccaacattctttggccaccagaaatacaatatccaacaagtgaaacaagat |
7563835 |
T |
|
| Q |
363 |
ggcgatgatgaacacgactaatgatgtcaatctcagcttggaactcccgttctccttgtccgctacccgattttaaactcttgacagctatttcctttcc |
462 |
Q |
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| T |
7563834 |
gacgatgatgaacacgactaatgatgtcaatctcagcttggaactcccgttctccttgtccgctacccgattttaaactcttgacagctatttcctttcc |
7563735 |
T |
|
| Q |
463 |
actcggcaacacacccttatggacatagccaaaaccaccttgtcctatcaaatttgaatcaatgaatccgtcggttgcagctgccaattcctcataagtg |
562 |
Q |
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| T |
7563734 |
actcggtaacacccccttatggacatagccaaaaccaccttgtcctatcaaatttgaatcaatgaatccgtcggttgcagctgccaattcctcataagtg |
7563635 |
T |
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| Q |
563 |
aatgtgcctcctttaagccctaaagcaaggcttggtgagggaggaggaagaggtggtggtccgcccgaataattcgagctcatgtctgt |
651 |
Q |
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| T |
7563634 |
aatgtgcctcctttaagccctaaagcaaggcttggtgagggaggaggaagaggtggtggtccgcccgaataattcgagctcatgtctgt |
7563546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 7564180 - 7564132
Alignment:
| Q |
17 |
aaggacatttgcagcttttatatcacgatggataatgcgtggatgacct |
65 |
Q |
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| T |
7564180 |
aaggacatttgcagcttttatatcacgatggataatgcgtggatgacct |
7564132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 120; Significance: 5e-61; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 275 - 510
Target Start/End: Original strand, 33145653 - 33145888
Alignment:
| Q |
275 |
tgatactccaatgtgttattggaaataaattcatagaccaacattctttggccaccagaaatacaatatccaacaagtgaaacaagatggcgatgatgaa |
374 |
Q |
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| T |
33145653 |
tgatattccaaagttttatttggaacaaattcataaaccaacattctctgtccaccagaaacacaatatccaacaagcgacacaagatgacgatgatgaa |
33145752 |
T |
|
| Q |
375 |
cacgactaatgatgtcaatctcagcttggaactcccgttctccttgtccgctacccgattttaaactcttgacagctatttcctttccactcggcaacac |
474 |
Q |
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| T |
33145753 |
cacgactaatgatatcaatctcagcttgaaactcacgttcgccttgtccactacccgcttttaaacttttaacagcaatttcctttccagtaggcaaaat |
33145852 |
T |
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| Q |
475 |
acccttatggacatagccaaaaccaccttgtcctat |
510 |
Q |
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| T |
33145853 |
tcccttatgaacataaccaaaaccaccttgtcctat |
33145888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 172 - 255
Target Start/End: Original strand, 33145448 - 33145531
Alignment:
| Q |
172 |
aatctcacaatcctcatgaagataagcaagccctttagcagaaccaattgcgatcctcattctcgtcggccaatccatggtagg |
255 |
Q |
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| T |
33145448 |
aatcttacaatcttcatgaaggtaagcaagtcctctagcagatcctaatgcaattctcattctagtaggccaatccatggtagg |
33145531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 341 - 429
Target Start/End: Complemental strand, 32902874 - 32902786
Alignment:
| Q |
341 |
tatccaacaagtgaaacaagatggcgatgatgaacacgactaatgatgtcaatctcagcttggaactcccgttctccttgtccgctacc |
429 |
Q |
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||||||||||| ||||||||||| |||||||||||| ||||| || |||| |||||||| || || |||||||||||||||||||| |
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| T |
32902874 |
tatccaacaagagaaacaagatgtttatgatgaacacggctaataatctcaacttcagcttgaaattcgcgttctccttgtccgctacc |
32902786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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