View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10346_low_41 (Length: 262)
Name: NF10346_low_41
Description: NF10346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10346_low_41 |
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Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 29103385 - 29103135
Alignment:
| Q |
1 |
ctatcaatggatcgataaaaatttctctttcattaaatttactaaaaataatagagtctatcgatggaccgatccatattaaacaacaatatactagtta |
100 |
Q |
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| T |
29103385 |
ctatcgatggatcgataaaaatttctctttcattaaatttactaaaaataatag--tctatcgatggaccggtccatattaaacaaccatatactagtta |
29103288 |
T |
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| Q |
101 |
gtaataaaaaggttcgcggttcaaacctgcaagccagaagaaggattgtcacattctctttcatcaagacgatactcatgcataacccaaccggtgcgag |
200 |
Q |
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| T |
29103287 |
gtaataaaaaggttcgtagttcaaacctgcaagccagaagaaggattgtcacattctctttcatcaagacgatactcatgcataacccaaccagtgcgag |
29103188 |
T |
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| Q |
201 |
atccatgtggtgctcttcctctatagtaaactagggttttcttcattccaacg |
253 |
Q |
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| T |
29103187 |
atccatgtggtgctcttcctctatagtaaactagggttttcttcattccaacg |
29103135 |
T |
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Back To:
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Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 149 - 245
Target Start/End: Original strand, 32789579 - 32789675
Alignment:
| Q |
149 |
tcacattctctttcatcaagacgatactcatgcataacccaaccggtgcgagatccatgtggtgctcttcctctatagtaaactagggttttcttca |
245 |
Q |
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| T |
32789579 |
tcacattccctctcatcaagtcgatattcatgcataacccaatttgtacgagagccatggggtgctcttcctcgatagtaaactagggttttcttca |
32789675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 161 - 231
Target Start/End: Original strand, 28663440 - 28663510
Alignment:
| Q |
161 |
tcatcaagacgatactcatgcataacccaaccggtgcgagatccatgtggtgctcttcctctatagtaaac |
231 |
Q |
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| T |
28663440 |
tcatcaaggcgatactcatgcataacccaatcagttcgaattccttgaggagctcttcctctatagtaaac |
28663510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 252
Target Start/End: Complemental strand, 32897719 - 32897679
Alignment:
| Q |
212 |
gctcttcctctatagtaaactagggttttcttcattccaac |
252 |
Q |
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| T |
32897719 |
gctcttcctctatagaaaacaagggttttcttcataccaac |
32897679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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