View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10346_low_43 (Length: 258)
Name: NF10346_low_43
Description: NF10346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10346_low_43 |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 7721548 - 7721307
Alignment:
| Q |
1 |
gatttagttcataaatctttctttcaaaatatcaccgaatattctttcattcacgacttcgtgactttccaaatgcatgatattgtgcatgatctggcaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7721548 |
gatttagttcataaatctttctttcaaaatatcaccgaatattctttcattcacgacttcgtgactttccaaatgcatgatattgtgcatgatctggcaa |
7721449 |
T |
|
| Q |
101 |
gttttatttcaagaaatgactatcttttagttaataaaaaggggcagcgtattgataaacacccccgccatgtctcttttggctttaaattggattcttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |||||||||||||||||| ||||||||||||| |
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| T |
7721448 |
gttttatttcaagaaatgactatcttttagttaataaaaaggggcagcatattgataaacaaccccgtcatgtctcttttggctttgaattggattcttc |
7721349 |
T |
|
| Q |
201 |
ctggcaagttccaacttctcttctcaatgcttccaaattaag |
242 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||| ||||| |
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| T |
7721348 |
ctggcaagttccaacttctcttctcaatgcttacaatttaag |
7721307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 7482868 - 7483106
Alignment:
| Q |
1 |
gatttagttcataaatctttctttcaaaatatcaccgaatattctttcattcacgacttcgtgactttccaaatgcatgatattgtgcatgatctggcaa |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| || | ||| | | | |||| || |||||||||||||||||||||||||||||||| |
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| T |
7482868 |
gatttagttcataaatctttctttcaaaatatcaccgaagataact--att-atggcagtgtgagttgccaaatgcatgatattgtgcatgatctggcaa |
7482964 |
T |
|
| Q |
101 |
gttttatttcaagaaatgactatcttttagttaataaaaaggggcagcgtattgataaacacccccgccatgtctcttttggctttaaattggattcttc |
200 |
Q |
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| T |
7482965 |
gtgttatttcaagaaatgattgtcttttagttaataaaaaggggcagcatattgataaacaacctcgtcatgtctcttttggctttaaattggattcttc |
7483064 |
T |
|
| Q |
201 |
ctggcaagttccaacttctcttctcaatgcttccaaattaag |
242 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||| |
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| T |
7483065 |
ctggcaagttccaacttctcttctcaatgcttacaaattaag |
7483106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 67 - 242
Target Start/End: Original strand, 7521000 - 7521175
Alignment:
| Q |
67 |
ttccaaatgcatgatattgtgcatgatctggcaagttttatttcaagaaatgactatcttttagttaataaaaaggggcagcgtattgataaacaccccc |
166 |
Q |
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|||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||| |||||| ||||| || | |
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| T |
7521000 |
ttccaaatgcatgatattgtgcatgatctggcaacttttgtttcaagagatgactatcttttagttaataaaaaggggcagcatattgacaaacaacctc |
7521099 |
T |
|
| Q |
167 |
gccatgtctcttttggctttaaattggattcttcctggcaagttccaacttctcttctcaatgcttccaaattaag |
242 |
Q |
| |
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| T |
7521100 |
gtcatgtctcttttggctttcaattggattcttcctggcaagttccaacttctcttctcaatgcttacaaattaag |
7521175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 7495264 - 7495504
Alignment:
| Q |
1 |
gatttagttcataaatctttctttcaaaatatcaccgaatattctttcattcacgacttcgtgactttccaaatgcatgatattgtgcatgatctggcaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||| || ||| || | | | |||| | |||||||||||||||||||||||||||||||| |
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| T |
7495264 |
gatttagttcataaatctttctttcaaaatatcactgaagataacttcttttatggcagtgtgagctgccaaatgcatgatattgtgcatgatctggcaa |
7495363 |
T |
|
| Q |
101 |
gttttatttcaagaaatgactatcttttagttaataaaaaggggcagcgtattgataaacacccccgccatgtctcttttggctttaaattggattcttc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||| | |||||| | ||| || || |||||||||||||||||| ||||||||||||| |
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| T |
7495364 |
gttttatttcaagaaatgactatcttttagttaaagaaaaggggcaacatattgacagacaacctcgtcatgtctcttttggctttgaattggattcttc |
7495463 |
T |
|
| Q |
201 |
ctggcaagttccaacttctcttctcaatgcttccaaattaa |
241 |
Q |
| |
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|||||||| |||||||||||||||||||||| |||||||| |
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| T |
7495464 |
ctggcaagctccaacttctcttctcaatgctcacaaattaa |
7495504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 7128270 - 7128029
Alignment:
| Q |
1 |
gatttagttcataaatctttctttcaaaatatcaccgaatattctttcattcacgacttcgtgactttccaaatgcatgatattgtgcatgatctggcaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| || || |||| | ||| | | |||||||||||||||||||||||||||||||||| |
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| T |
7128270 |
gatttagttcataaatctttctttcaaaatatcaccaaacatgttttctatggcgagaatgaaatgttccaaatgcatgatattgtgcatgatctggcaa |
7128171 |
T |
|
| Q |
101 |
gttttatttcaagaaatgactatcttttagttaataaaaaggggcagcgtattgataaacacccccgccatgtctcttttggctttaaattggattcttc |
200 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||||||||||| |||| |||||| |||| |||||||||||||||||||||||| |||||||||||| |
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| T |
7128170 |
cttttgtttcaagagatgactatcttttagttaataaaaaggagcagaatattgacgaacaaacccgccatgtctcttttggctttatattggattcttc |
7128071 |
T |
|
| Q |
201 |
ctggcaagttccaacttctcttctcaatgcttccaaattaag |
242 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||| |
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| T |
7128070 |
ctggcaagttccaacttctcttctcaatgctcacaaattaag |
7128029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 69 - 242
Target Start/End: Original strand, 7529049 - 7529222
Alignment:
| Q |
69 |
ccaaatgcatgatattgtgcatgatctggcaagttttatttcaagaaatgactatcttttagttaataaaaaggggcagcgtattgataaacacccccgc |
168 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |||||||||||||||| | |||||||||||||||||||||||||| |||||||||||| || || |
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| T |
7529049 |
ccaaatgcatgatattatgcatgatctggcaagtgttatttcaagaaatgattgtcttttagttaataaaaaggggcagcatattgataaacaacctcgt |
7529148 |
T |
|
| Q |
169 |
catgtctcttttggctttaaattggattcttcctggcaagttccaacttctcttctcaatgcttccaaattaag |
242 |
Q |
| |
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|||||||||||||| ||| ||||| || ||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
7529149 |
catgtctcttttggttttcaattgaatcattcctggcaagttccaacttctcttctcaatgcttacaaattaag |
7529222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 94 - 242
Target Start/End: Complemental strand, 7717623 - 7717475
Alignment:
| Q |
94 |
ctggcaagttttatttcaagaaatgactatcttttagttaataaaaaggggcagcgtattgataaacacccccgccatgtctcttttggctttaaattgg |
193 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| || | |||||||||||||||||| ||||| |
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| T |
7717623 |
ctggcatgttttatttcaagaaatgactatcttttagttaataaaaaggggcagcatattgacaaacaacctcatcatgtctcttttggctttcaattga |
7717524 |
T |
|
| Q |
194 |
attcttcctggcaagttccaacttctcttctcaatgcttccaaattaag |
242 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
7717523 |
atcattcctggcaagttccaacttctcttctcaatgcttacaaattaag |
7717475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 7520934 - 7520969
Alignment:
| Q |
1 |
gatttagttcataaatctttctttcaaaatatcacc |
36 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |
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|
| T |
7520934 |
gatttagttcataaatctttctttcaaaatatcacc |
7520969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 7528984 - 7529022
Alignment:
| Q |
1 |
gatttagttcataaatctttctttcaaaatatcaccgaa |
39 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
7528984 |
gatttagtttataaatctttctttcaaaatatcaccgaa |
7529022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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