View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10346_low_46 (Length: 253)
Name: NF10346_low_46
Description: NF10346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10346_low_46 |
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| [»] chr4 (6 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 17 - 253
Target Start/End: Original strand, 7520562 - 7520798
Alignment:
| Q |
17 |
agagaactagagaatgacgaattggtgtcaattggcaaggaaattgtgaagaaatgttcaggggttcctctcgccatcagaagcattggaagcttaatgt |
116 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7520562 |
agagaactagagaatgaggaattggtgtcaattggcaaggaaattgtgaagaaatgttcaggggttcctctcgccatcagaagcattggaagcttaatgt |
7520661 |
T |
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| Q |
117 |
attccatgcagaaggaggattggtcaacattcaagaacaaagatcttatgcaacttgatgaacaaggtgataaaattttacagcttatcaaactaagtta |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7520662 |
attccatgcagaaggaggattggtcaacattcaagaacaaagatcttatgcaaattgatgaacaaggtgataaaattttacagcttatcaaactaagtta |
7520761 |
T |
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| Q |
217 |
tgatcatctaccatttcatttgaaaaagtgctttgct |
253 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
7520762 |
tgatcatctaccatttcatttgaaaaagtgctttgct |
7520798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 17 - 253
Target Start/End: Original strand, 7494895 - 7495131
Alignment:
| Q |
17 |
agagaactagagaatgacgaattggtgtcaattggcaaggaaattgtgaagaaatgttcaggggttcctctcgccatcagaagcattggaagcttaatgt |
116 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7494895 |
agagaactagagaatgaggaattggtgtcaattggcaaggaaattgtgaagaaatgttcaggggttcctctcgccatcagaagcattggaagcttaatgt |
7494994 |
T |
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| Q |
117 |
attccatgcagaaggaggattggtcaacattcaagaacaaagatcttatgcaacttgatgaacaaggtgataaaattttacagcttatcaaactaagtta |
216 |
Q |
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| T |
7494995 |
attccatgcagaaggaggattggtcatcattcaagaacaaagatcttatgcaaattgatgaacaaggtgataaaattttacagcttatcaaactaagtta |
7495094 |
T |
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| Q |
217 |
tgatcatctaccatttcatttgaaaaagtgctttgct |
253 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
7495095 |
tgatcatctaccatttcatttgaaaaagtgctttgct |
7495131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 16 - 253
Target Start/End: Complemental strand, 7128646 - 7128406
Alignment:
| Q |
16 |
cagagaactagagaatgacgaattggtgtcaattggcaaggaaattgtgaagaaatgttcaggggttcctctcgccatcagaagcattggaagcttaatg |
115 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7128646 |
cagagaactagagaatgaggaattggtgtcaattggcaaggaaattgtgaaaaaatgttcaggggttcctctcgccatcagaagcattggaagcttaatg |
7128547 |
T |
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| Q |
116 |
tattccatgcagaaggaggattggtcaacattcaagaacaaagatcttatgcaacttgatgaacaaggtg---ataaaattttacagcttatcaaactaa |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||| || ||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
7128546 |
tattccatgcagaaggaggattggtcaacattcaagaacatagatcttatgaaaattgatgaacaaggtgataataaaattttacagcttatcaaactaa |
7128447 |
T |
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| Q |
213 |
gttatgatcatctaccatttcatttgaaaaagtgctttgct |
253 |
Q |
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| T |
7128446 |
gttatgatcatctaccatttcatttgaaaaagtgctttgct |
7128406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 16 - 253
Target Start/End: Original strand, 7528611 - 7528848
Alignment:
| Q |
16 |
cagagaactagagaatgacgaattggtgtcaattggcaaggaaattgtgaagaaatgttcaggggttcctctcgccatcagaagcattggaagcttaatg |
115 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| | || |||||||||||||||||||||||||||||||||||| |
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| T |
7528611 |
cagagaactagagaatgaggaattggtgtcaattggcaaggaaattgtgaaaaaatgtgcgggtgttcctctcgccatcagaagcattggaagcttaatg |
7528710 |
T |
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| Q |
116 |
tattccatgcagaaggaggattggtcaacattcaagaacaaagatcttatgcaacttgatgaacaaggtgataaaattttacagcttatcaaactaagtt |
215 |
Q |
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|||| || | |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7528711 |
tatttcaaggagaaggaggattggtcaacattcaagaacaaagatcttatgcaaattgatgaacaaggtgataaaattttacagcttatcaaactaagtt |
7528810 |
T |
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| Q |
216 |
atgatcatctaccatttcatttgaaaaagtgctttgct |
253 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
7528811 |
atgatcatctaccatttcatttgaaaaagtgctttgct |
7528848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 16 - 253
Target Start/End: Complemental strand, 7721920 - 7721680
Alignment:
| Q |
16 |
cagagaactagagaatgacgaattggtgtcaattggcaaggaaattgtgaagaaatgttcaggggttcctctcgccatcagaagcattggaagcttaatg |
115 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||| ||| |
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| T |
7721920 |
cagagaactagagaatgaggaattggtgtcaattggcaaggaaattgtgaaaaaatgttcaggggttccgctcgccattagaagcattggaagcttgatg |
7721821 |
T |
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| Q |
116 |
tattccatgcagaaggaggattggtcaacattcaagaacaaagatcttatgcaacttgatgaacaaggtg---ataaaattttacagcttatcaaactaa |
212 |
Q |
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|||||||||| |||| ||||||||||||||||||||||||||||||||||| || ||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
7721820 |
tattccatgccgaagaaggattggtcaacattcaagaacaaagatcttatgaaaattgatgaacaaggtgataataaaattttacagcttatcaaactaa |
7721721 |
T |
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| Q |
213 |
gttatgatcatctaccatttcatttgaaaaagtgctttgct |
253 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
7721720 |
gttatgatcatctaccatttcatttgaaaaagtgctttgct |
7721680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 26 - 253
Target Start/End: Original strand, 7482502 - 7482732
Alignment:
| Q |
26 |
gagaatgacgaattggtgtcaattggcaaggaaattgtgaagaaatgttcaggggttcctctcgccatcagaagcattggaagcttaatgtattccatgc |
125 |
Q |
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|||||||| ||||| |||||| ||||||||||||||||||| |||||| | || |||||||||||||| |||||||||||||||||||| |||||||||| |
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| T |
7482502 |
gagaatgaggaatttgtgtcagttggcaaggaaattgtgaaaaaatgtgcgggtgttcctctcgccattagaagcattggaagcttaatctattccatgc |
7482601 |
T |
|
| Q |
126 |
agaaggaggattggtcaacattcaagaacaaagatcttatgcaacttgatgaacaaggtg---ataaaattttacagcttatcaaactaagttatgatca |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |||||||||| |||||||||||||||||||||||||| |
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| T |
7482602 |
ggaaggaggattggtcaacattcaagaacaaagatcttatgaaaattgatgaacaaggtgataataaaatttttcagcttatcaaactaagttatgatca |
7482701 |
T |
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| Q |
223 |
tctaccatttcatttgaaaaagtgctttgct |
253 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
7482702 |
tctaccatttcatttgaaaaagtgctttgct |
7482732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 40 - 252
Target Start/End: Complemental strand, 16749903 - 16749685
Alignment:
| Q |
40 |
ggtgtcaattggcaaggaaattgtgaagaaatgttcaggggttcctctcgc-catcagaagcattggaagcttaatgtattccatgcaga---aggagga |
135 |
Q |
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|||||||||||||||||||||| || |||||||||||||| ||||| || ||| | ||| |||||||| ||||||| ||| ||| | | || |||| |
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| T |
16749903 |
ggtgtcaattggcaaggaaatttcaaaaaaatgttcaggggtacctcttgctcataa-aagtattggaagtttaatgttttctatggaaactgagaagga |
16749805 |
T |
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| Q |
136 |
ttggtcaacattcaagaacaaagatcttatgcaacttgatgaacaaggtg---ataaaattttacagcttatcaaactaagttatgatcatctaccattt |
232 |
Q |
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||||| | |||||||||||||||||||| || ||||||| || |||| |||||||||| || ||||||||||||||||||||||||||||| ||| |
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| T |
16749804 |
ttggttgaacttcaagaacaaagatcttatcaaaattgatgagcagggtggcaataaaatttttcaacttatcaaactaagttatgatcatctacccttt |
16749705 |
T |
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| Q |
233 |
catttgaaaaagtgctttgc |
252 |
Q |
| |
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|| |||||||||||||||| |
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| T |
16749704 |
tatctgaaaaagtgctttgc |
16749685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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