View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10346_low_5 (Length: 623)
Name: NF10346_low_5
Description: NF10346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10346_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 572; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 572; E-Value: 0
Query Start/End: Original strand, 18 - 609
Target Start/End: Original strand, 2899774 - 2900365
Alignment:
| Q |
18 |
ataaggagctaaaggatttacaatttggttcaccaaatcatcgagacttgcttcatttatgtctctcttctcccaattgcaatagtgacacttgttttct |
117 |
Q |
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| T |
2899774 |
ataaggagctaaaggatttacaatttggttcaccaaatcatcgagacttgcttcatttatgtctctcttctcccaattgcaatagtgacacttgttttct |
2899873 |
T |
|
| Q |
118 |
ggaatcatcccctgctacagagtaagtttcttcttggtgctttgtatttttaaagtgaagtcaatttaataatcgttgcgaaatgcatgtttggtatcac |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2899874 |
ggaatcatcccctgctacagagtaagtttcttcttggtgctttgtatttttaaagtgaagtcaatttaataatcgttgcgaaatgcatgtttggtatcac |
2899973 |
T |
|
| Q |
218 |
agcgagtttgccagtattacggttcacggtggctcactgtgaatcaggaagactcatccgtgataccaaatgtagtttgttgcagtattgctttaacaat |
317 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2899974 |
agcgagtttgccagtattatggttcacggtggctcactgtgaatcaggaagactcatccgtgataccaaatgtagtttgttgcagtattgctttaacaat |
2900073 |
T |
|
| Q |
318 |
atttcacaatttttgtttgataggaaaataaaatcgcaaattagctcgaaaaatggaatctggacagatgaagaggtacatacgttgctttaatttgaaa |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |
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| T |
2900074 |
atttcacaatttttgtttgataggaaaataaaatcgcaaattagctcgaaaaatggaatctggacagaagaagaggtacgtacgttgctttaatttgaaa |
2900173 |
T |
|
| Q |
418 |
tcattagtaatatagtttcttaactgtgacatttgatttggttaaggctcaagggctattgaaatattttttgtaccaattttaactattattggaagtt |
517 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| |
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| T |
2900174 |
tcattagtaatatagtttcttaactgtgacatttgatttggttaaggctcaagggctattgaaatatttgttctaccaattttaactattattggaagtt |
2900273 |
T |
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| Q |
518 |
gcagtttttgttcttatactcttttttgtctttgttatccttttgtggtatttattatgttaggttgcaatttacagtgttaatgctctctg |
609 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2900274 |
gcagtttttgttcttatactcttttttgtctttgttatccttttgtggtatttattatgttaggttgcaatttacagtgttaatgctctctg |
2900365 |
T |
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