View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10346_low_50 (Length: 250)
Name: NF10346_low_50
Description: NF10346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10346_low_50 |
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Alignment Details
Target: chr6 (Bit Score: 236; Significance: 1e-130; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 6496356 - 6496117
Alignment:
| Q |
1 |
tttttatccttggatcgacacttttagcctttggaattaaagcggctcaaatgtggtggcatataaaagaaggaggaaaactatatgccgaagaatttac |
100 |
Q |
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| T |
6496356 |
tttttatccttggatcgacacttttagcctttggaattaaagcggctcaaatgtggtggcatataaaagaaggaggaaaactatatgccgaagaatttac |
6496257 |
T |
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| Q |
101 |
caaagcgaatcggatcatgggatttctatggtccaacaagagagaaagtggactttggtttgctccaccggaatataaagaatgtagggttggagttcag |
200 |
Q |
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| T |
6496256 |
aaaagcgaatcggatcatgggatttctatggtccaacaagagagaaagtggactttggtttgctccaccggaatataaagaatgtagggttggagttcag |
6496157 |
T |
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| Q |
201 |
ctcttaccattgcttcctatttctgaagtattgttctctg |
240 |
Q |
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| T |
6496156 |
ctcttaccattgcttcctatttctgaagtattgttctctg |
6496117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 6462316 - 6462555
Alignment:
| Q |
1 |
tttttatccttggatcgacacttttagcctttggaattaaagcggctcaaatgtggtggcatataaaagaaggaggaaaactatatgccgaagaatttac |
100 |
Q |
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| T |
6462316 |
tttttatcaatggatcgacactattagcttttggaattaaagcagctcaaatgtggtggcatataaaagaaggagataaactatatgcagaagagtttac |
6462415 |
T |
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| Q |
101 |
caaagcgaatcggatcatgggatttctatggtccaacaagagagaaagtggactttggtttgctccaccggaatataaagaatgtagggttggagttcag |
200 |
Q |
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| T |
6462416 |
aaaagagaacaggatcatgggatttctatggtctaacaagagagaaagtggactttggtttgctccacctgaatatagagaatgtagacttggaattcag |
6462515 |
T |
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| Q |
201 |
ctcttaccattgcttcctatttctgaagtattgttctctg |
240 |
Q |
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| T |
6462516 |
ctcttaccattggttcctatttctgaagtattgttctctg |
6462555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 49 - 235
Target Start/End: Original strand, 6473586 - 6473772
Alignment:
| Q |
49 |
aaatgtggtggcatataaaagaaggaggaaaactatatgccgaagaatttaccaaagcgaatcggatcatgggatttctatggtccaacaagagagaaag |
148 |
Q |
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| T |
6473586 |
aaatgtggtggcatgtaaaagaaggagagaatctctatgaggaagattttacaaaagagaataggatgatgggagttctatggtctaacaagagagacag |
6473685 |
T |
|
| Q |
149 |
tggactttggtttgctccaccggaatataaagaatgtagggttggagttcagctcttaccattgcttcctatttctgaagtattgtt |
235 |
Q |
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| T |
6473686 |
tggattatggtttgctccggctgcatggaaagaatgtaggcttggaattcagctcctaccattgattcctatttctgaagttttgtt |
6473772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 135 - 227
Target Start/End: Complemental strand, 6464882 - 6464790
Alignment:
| Q |
135 |
aacaagagagaaagtggactttggtttgctccaccggaatataaagaatgtagggttggagttcagctcttaccattgcttcctatttctgaa |
227 |
Q |
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||||||||||| |||||| | ||||||||||| || |||| |||||||||||| |||| |||||||||||||||||||||| ||||||||| |
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| T |
6464882 |
aacaagagagacagtggattatggtttgctcctcctgaatggaaagaatgtaggcttgggattcagctcttaccattgcttccaatttctgaa |
6464790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 129 - 240
Target Start/End: Complemental strand, 6525926 - 6525815
Alignment:
| Q |
129 |
tggtccaacaagagagaaagtggactttggtttgctccaccggaatataaagaatgtagggttggagttcagctcttaccattgcttcctatttctgaag |
228 |
Q |
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| T |
6525926 |
tggtcgaacaaaagagacagtggtttatggtttggtccagctgaatggaaagaatgtaggcttgggattcagctcttaccattgcttccaatttctgaag |
6525827 |
T |
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| Q |
229 |
tattgttctctg |
240 |
Q |
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| T |
6525826 |
tcttgttctctg |
6525815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 105
Target Start/End: Complemental strand, 6457012 - 6456952
Alignment:
| Q |
45 |
gctcaaatgtggtggcatataaaagaaggaggaaaactatatgccgaagaatttaccaaag |
105 |
Q |
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| T |
6457012 |
gctcaaatgtggtggcatataaaaggcggagataaactttatgctgaagaattttccaaag |
6456952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 196 - 235
Target Start/End: Complemental strand, 46382908 - 46382869
Alignment:
| Q |
196 |
ttcagctcttaccattgcttcctatttctgaagtattgtt |
235 |
Q |
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| T |
46382908 |
ttcagctcttaccattgtttcctatttctgaagtcttgtt |
46382869 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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