View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10346_low_57 (Length: 240)
Name: NF10346_low_57
Description: NF10346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10346_low_57 |
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Alignment Details
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 6361799 - 6361581
Alignment:
| Q |
1 |
tgaagacttcattgtgtatcattcttctagaattctccattctatttgctctttttccctctaaaaacattactctatttagatattatatcaaaatatt |
100 |
Q |
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| T |
6361799 |
tgaagacttcattgtgtatcattcttctagaattctccattctatttgctctttttccctctaaaaacattactctatttagatattatatcaaaatatt |
6361700 |
T |
|
| Q |
101 |
gtgcatagcactaatgtaattgaaacgttttggggcgtttagttaacacctgacttgctaccttaaccttttcattatgaagttaatcttctttaattcc |
200 |
Q |
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| T |
6361699 |
gtgcatagcactaatgtaattgaaacgttttgggacgt----ttaacacctgacttggtaccttgaccttttcattatgaagttaatcttctttaattcc |
6361604 |
T |
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| Q |
201 |
aaatgccttacatcccttttgat |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
6361603 |
aaatgccttacatcccttttgat |
6361581 |
T |
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Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 35 - 194
Target Start/End: Original strand, 32856320 - 32856478
Alignment:
| Q |
35 |
ctccattctatttgctctttttccctctaaaaacattactctatttagatattatatcaaaatattgtgcatagcactaatgtaattgaaacgttttggg |
134 |
Q |
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||||||||| ||| ||||||||||| || |||| ||| ||||| | || || ||||||||||||||||||||||||| ||||| |||||||||| || | |
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| T |
32856320 |
ctccattctgtttactctttttcccccttaaaatattcttctatgt-gacatcatatcaaaatattgtgcatagcactgatgtatttgaaacgttctgcg |
32856418 |
T |
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| Q |
135 |
gcgtttagttaacacctgacttgctaccttaaccttttcattatgaagttaatcttcttt |
194 |
Q |
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||| ||||||||||| |||||| |||||||||||| |||| || | |||||||||||| |
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| T |
32856419 |
atgttcagttaacacctaacttgcaaccttaacctttacattgtggatttaatcttcttt |
32856478 |
T |
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