View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10346_low_61 (Length: 233)
Name: NF10346_low_61
Description: NF10346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10346_low_61 |
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Alignment Details
Target: chr7 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 40936575 - 40936365
Alignment:
| Q |
1 |
atcggataagtgagtgttggctaagaggctgagactttgacagtatgagtgaaaactcaaatagggaactttatatatttgttatctgtccatgcccgta |
100 |
Q |
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| T |
40936575 |
atcggataagtgagtgttggctaagaggctgagactttgacagtatgagtgaaaactcaaatagggaactttatatatttgttatctgtccatgcccgta |
40936476 |
T |
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| Q |
101 |
ttttaaaataggaaaaaactcaaattcatacctaaattctatcaaaatgggaaaatccgttaaattgtgattggttcgagtaaaaacccgtagattttgt |
200 |
Q |
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| T |
40936475 |
ttttaaaataggaaaaaactcaaattcatacctaaattctatcaaaatgggaaaatccgttaaattgtgattggttcgagtaaaaacccgtagattttgt |
40936376 |
T |
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| Q |
201 |
tgccatccctg |
211 |
Q |
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||||||||||| |
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| T |
40936375 |
tgccatccctg |
40936365 |
T |
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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 155
Target Start/End: Complemental strand, 21956848 - 21956788
Alignment:
| Q |
95 |
cccgtattttaaaataggaaaaaactcaaattcatacctaaattctatcaaaatgggaaaa |
155 |
Q |
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| T |
21956848 |
cccgtgttttaaaatcggaaaaaacccaaactcatacccaaatccaattaaaatgggaaaa |
21956788 |
T |
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