View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10346_low_64 (Length: 228)
Name: NF10346_low_64
Description: NF10346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10346_low_64 |
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Alignment Details
Target: chr3 (Bit Score: 163; Significance: 3e-87; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 52679404 - 52679218
Alignment:
| Q |
1 |
atgtaacttcaaaagaggacacttcaaagcaaagcattattgtttaaatgaggttctaatattaatggctgaaaatggctccaaaatatatattatatcc |
100 |
Q |
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| T |
52679404 |
atgtaacttcaaaagaggacccttcaaagcaaagcattattgtttatatgaggttctaatattaatggctgaaaatggctccaaaatatatattatatcc |
52679305 |
T |
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| Q |
101 |
cgattggaaaattcgacaacattcagactcacgaaatcgtatggtacaaagtgttaaacggctaagagtcaacacgagaatcaaata |
187 |
Q |
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| T |
52679304 |
cgattggaaaattcgacaacattcagactgacgaagtcgtatggtacaaagtgttaaacggttaagagtcaacacaagaatcaaata |
52679218 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 211
Target Start/End: Original strand, 38849958 - 38850030
Alignment:
| Q |
139 |
gtatggtacaaagtgttaaacggctaagagtcaacacgagaatcaaataaatatagtaaagatggggatgttg |
211 |
Q |
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| T |
38849958 |
gtatggtacaaagtgttgggcggttaagagtcaacacgagaatcaagtaagtgtagcagagatgaggatgttg |
38850030 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 211
Target Start/End: Complemental strand, 47265620 - 47265548
Alignment:
| Q |
139 |
gtatggtacaaagtgttaaacggctaagagtcaacacgagaatcaaataaatatagtaaagatggggatgttg |
211 |
Q |
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| T |
47265620 |
gtatggtacaaagtattggacggttaagagtcaacacgagaatcaagtaggtgtagcaaagatgaggatgttg |
47265548 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 211
Target Start/End: Complemental strand, 48174511 - 48174439
Alignment:
| Q |
139 |
gtatggtacaaagtgttaaacggctaagagtcaacacgagaatcaaataaatatagtaaagatggggatgttg |
211 |
Q |
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||||||||| |||||| |||| |||||||||||| || |||||| ||| ||||| ||||||| |||||||| |
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| T |
48174511 |
gtatggtacggagtgttggacggttaagagtcaacatgaaaatcaagtaagtatagcaaagatgaggatgttg |
48174439 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 211
Target Start/End: Original strand, 2796443 - 2796491
Alignment:
| Q |
163 |
taagagtcaacacgagaatcaaataaatatagtaaagatggggatgttg |
211 |
Q |
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| T |
2796443 |
taagagtcaacacgagaatcaagtaagtgtagcaaagatgaggatgttg |
2796491 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 211
Target Start/End: Original strand, 37281971 - 37282043
Alignment:
| Q |
139 |
gtatggtacaaagtgttaaacggctaagagtcaacacgagaatcaaataaatatagtaaagatggggatgttg |
211 |
Q |
| |
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||||| |||| |||||||| ||| ||||| |||| ||||||||||| ||| |||||| ||||| |||||||| |
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| T |
37281971 |
gtatgatacagagtgttaagcggttaagaatcaatacgagaatcaagtaagtatagttgagatgaggatgttg |
37282043 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 211
Target Start/End: Complemental strand, 49347811 - 49347739
Alignment:
| Q |
139 |
gtatggtacaaagtgttaaacggctaagagtcaacacgagaatcaaataaatatagtaaagatggggatgttg |
211 |
Q |
| |
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||||||||| ||||||| ||| |||||||||||| ||||||||| ||| | ||| ||||||| |||||||| |
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| T |
49347811 |
gtatggtacgaagtgttgggcggttaagagtcaacatgagaatcaagtaagtgtagcaaagatgaggatgttg |
49347739 |
T |
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