View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10346_low_67 (Length: 217)

Name: NF10346_low_67
Description: NF10346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10346_low_67
NF10346_low_67
[»] chr8 (3 HSPs)
chr8 (19-192)||(28130455-28130632)
chr8 (23-195)||(37742174-37742344)
chr8 (19-87)||(44843081-44843148)
[»] chr5 (2 HSPs)
chr5 (19-192)||(20407345-20407522)
chr5 (133-192)||(34985246-34985305)
[»] chr2 (2 HSPs)
chr2 (19-192)||(13098484-13098661)
chr2 (19-142)||(29608861-29608981)
[»] chr1 (6 HSPs)
chr1 (19-192)||(37381761-37381938)
chr1 (19-192)||(41768018-41768195)
chr1 (19-192)||(50985799-50985976)
chr1 (19-189)||(11166609-11166783)
chr1 (19-189)||(46387665-46387839)
chr1 (19-192)||(4296990-4297167)
[»] chr4 (1 HSPs)
chr4 (19-192)||(36040465-36040642)
[»] chr6 (2 HSPs)
chr6 (19-192)||(18272859-18273037)
chr6 (31-192)||(27831193-27831358)
[»] chr7 (3 HSPs)
chr7 (19-92)||(46373279-46373351)
chr7 (133-192)||(29054519-29054578)
chr7 (133-192)||(46372891-46372950)
[»] chr3 (1 HSPs)
chr3 (20-192)||(12007381-12007549)


Alignment Details
Target: chr8 (Bit Score: 86; Significance: 3e-41; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 19 - 192
Target Start/End: Complemental strand, 28130632 - 28130455
Alignment:
Q  19 ccaactaaataaatccgatgttggttgacacagaaaacggaaaaaagttttcttttgtacaaaaaagatactccaattgattgt-aggtctgcaatcaat 117  Q
    ||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||    |||  | ||| || ||| ||||||||    
T  28130632 ccaactaaataaatccgattttggttgacactgaaaacg-aaaaaagttttcttttgtacaaaaaagatat---aatctaatgtcagatctacaatcaat 28130537  T
Q  118 tcgaggcaaattttcaatttcaaat-------actcttatactgtcattcactactctttcataatttaatactctctcatt 192  Q
    | |||||||||||||||||||||||       ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  28130536 tggaggcaaattttcaatttcaaatttcaaatactcttatattgtcattcactactctttcataatttaatactctctcatt 28130455  T

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Target: chr8; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 23 - 195
Target Start/End: Original strand, 37742174 - 37742344
Alignment:
Q  23 ctaaataaatccgatgttggttgacacagaaaacggaaaaaagttttcttttgtacaaaaaagatactccaattgattgt-aggtctgcaatcaattcga 121  Q
    ||||||||||||||| ||||||||||| |||||||  ||||||||||     ||||||||||||||    |||  | ||| || ||| ||||||||| ||    
T  37742174 ctaaataaatccgattttggttgacacggaaaacg--aaaaagtttt-----gtacaaaaaagatat---aatctaatgtcagatctacaatcaattgga 37742263  T
Q  122 ggcaaattttcaatt-------tcaaatactcttatactgtcattcactactctttcataatttaatactctctcattttc 195  Q
    |||||||||||||||       ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||    
T  37742264 ggcaaattttcaatttcaaatttcaaatactcttatattatcattcactactctttcataatttaatactctctcattttc 37742344  T

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Target: chr8; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 44843148 - 44843081
Alignment:
Q  19 ccaactaaataaatccgatgttggttgacacagaaaacggaaaaaagttttcttttgtacaaaaaagat 87  Q
    ||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  44843148 ccaactaaataaatccgattttggttgacacggaaaac-gaaaaaagttttcttttgtacaaaaaagat 44843081  T

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Target: chr5 (Bit Score: 86; Significance: 3e-41; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 19 - 192
Target Start/End: Complemental strand, 20407522 - 20407345
Alignment:
Q  19 ccaactaaataaatccgatgttggttgacacagaaaacggaaaaaagttttcttttgtacaaaaaagatactccaattgattgt-aggtctgcaatcaat 117  Q
    ||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||    |||  | ||| || ||| ||||||||    
T  20407522 ccaactaaataaatccgattttggttgacacggaaaacg-aaaaaagttttcttttgtacaaaaaagatat---aatctaatgtcagatctacaatcaat 20407427  T
Q  118 tcgaggcaaattttcaatttcaaat-------actcttatactgtcattcactactctttcataatttaatactctctcatt 192  Q
    | |||||||||||||||||||||||       ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  20407426 tggaggcaaattttcaatttcaaatttcaaatactcttatattgtcattcactactctttcataatttaatactctctcatt 20407345  T

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Target: chr5; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 133 - 192
Target Start/End: Original strand, 34985246 - 34985305
Alignment:
Q  133 aatttcaaatactcttatactgtcattcactactctttcataatttaatactctctcatt 192  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  34985246 aatttcaaatactcttatattgtcattcactactctttcataatttaatactctctcatt 34985305  T

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Target: chr2 (Bit Score: 86; Significance: 3e-41; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 19 - 192
Target Start/End: Original strand, 13098484 - 13098661
Alignment:
Q  19 ccaactaaataaatccgatgttggttgacacagaaaacggaaaaaagttttcttttgtacaaaaaagatactccaattgattgt-aggtctgcaatcaat 117  Q
    ||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||    |||  | ||| || ||| ||||||||    
T  13098484 ccaactaaataaatccgattttggttgacacggaaaacg-aaaaaagttttcttttgtacaaaaaagatat---aatctaatgtcagatctacaatcaat 13098579  T
Q  118 tcgaggcaaattttcaatt-------tcaaatactcttatactgtcattcactactctttcataatttaatactctctcatt 192  Q
    | |||||||||||||||||       ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  13098580 tggaggcaaattttcaatttcaaatttcaaatactcttatattgtcattcactactctttcataatttaatactctctcatt 13098661  T

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Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 19 - 142
Target Start/End: Complemental strand, 29608981 - 29608861
Alignment:
Q  19 ccaactaaataaatccgatgttggttgacacagaaaacggaaaaaagttttcttttgtacaaaaaagatactccaattgattgt-aggtctgcaatcaat 117  Q
    ||||| ||||||||| ||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||    |||  | ||| || ||| ||||||||    
T  29608981 ccaacaaaataaatctgattttggttgacacggaaaacg-aaaaaagttttcttttgtacaaaaaagata---taatctaatgtcagatctacaatcaat 29608886  T
Q  118 tcgaggcaaattttcaatttcaaat 142  Q
    | |||||||||||||||||||||||    
T  29608885 tggaggcaaattttcaatttcaaat 29608861  T

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Target: chr1 (Bit Score: 86; Significance: 3e-41; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 19 - 192
Target Start/End: Original strand, 37381761 - 37381938
Alignment:
Q  19 ccaactaaataaatccgatgttggttgacacagaaaacggaaaaaagttttcttttgtacaaaaaagatactccaattgattgt-aggtctgcaatcaat 117  Q
    ||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||    |||  | ||| || ||| ||||||||    
T  37381761 ccaactaaataaatccgattttggttgacacggaaaacg-aaaaaagttttcttttgtacaaaaaagatat---aatctaatgtcagatctacaatcaat 37381856  T
Q  118 tcgaggcaaattttcaatt-------tcaaatactcttatactgtcattcactactctttcataatttaatactctctcatt 192  Q
    | |||||||||||||||||       ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  37381857 tggaggcaaattttcaatttcaaatttcaaatactcttatattgtcattcactactctttcataatttaatactctctcatt 37381938  T

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Target: chr1; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 19 - 192
Target Start/End: Original strand, 41768018 - 41768195
Alignment:
Q  19 ccaactaaataaatccgatgttggttgacacagaaaacggaaaaaagttttcttttgtacaaaaaagatactccaattgattgt-aggtctgcaatcaat 117  Q
    ||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||    |||  | ||| || ||| ||||||||    
T  41768018 ccaactaaataaatccgattttggttgacacggaaaacg-aaaaaagttttcttttgtacaaaaaagatat---aatctaatgtcagatctacaatcaat 41768113  T
Q  118 tcgaggcaaattttcaatt-------tcaaatactcttatactgtcattcactactctttcataatttaatactctctcatt 192  Q
    | |||||||||||||||||       ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  41768114 tggaggcaaattttcaatttcaaatttcaaatactcttatattgtcattcactactctttcataatttaatactctctcatt 41768195  T

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Target: chr1; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 19 - 192
Target Start/End: Original strand, 50985799 - 50985976
Alignment:
Q  19 ccaactaaataaatccgatgttggttgacacagaaaacggaaaaaagttttcttttgtacaaaaaagatactccaattgattgt-aggtctgcaatcaat 117  Q
    ||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||    |||  | ||| || ||| ||||||||    
T  50985799 ccaactaaataaatccgattttggttgacacggaaaacg-aaaaaagttttcttttgtacaaaaaagatat---aatctaatgtcagatctacaatcaat 50985894  T
Q  118 tcgaggcaaattttcaatt-------tcaaatactcttatactgtcattcactactctttcataatttaatactctctcatt 192  Q
    | |||||||||||||||||       ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  50985895 tggaggcaaattttcaatttcaaatttcaaatactcttatattgtcattcactactctttcataatttaatactctctcatt 50985976  T

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Target: chr1; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 19 - 189
Target Start/End: Complemental strand, 11166783 - 11166609
Alignment:
Q  19 ccaactaaataaatccgatgttggttgacacagaaaacggaaaaaagttttcttttgtacaaaaaagatactccaattgattgt-aggtctgcaatcaat 117  Q
    ||||||||||||||||||| ||||||||||| |||||| |||||||||||||||||||||||||||||||    |||  | ||| || ||| ||||||||    
T  11166783 ccaactaaataaatccgattttggttgacacggaaaac-gaaaaaagttttcttttgtacaaaaaagata---taatctaatgtcagatctacaatcaat 11166688  T
Q  118 tcgaggcaaattttc-------aatttcaaatactcttatactgtcattcactactctttcataatttaatactctctc 189  Q
    | |||||||||||||       ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  11166687 tggaggcaaattttcaatttcaaatttcaaatactcttatattgtcattcactactctttcataatttaatactctctc 11166609  T

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Target: chr1; HSP #5
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 19 - 189
Target Start/End: Complemental strand, 46387839 - 46387665
Alignment:
Q  19 ccaactaaataaatccgatgttggttgacacagaaaacggaaaaaagttttcttttgtacaaaaaagatactccaattgattgt-aggtctgcaatcaat 117  Q
    ||||||||||||||||||| ||||||||||| ||||||  ||||||||||||||||||||||||||||||    |||  | ||| || ||| ||||||||    
T  46387839 ccaactaaataaatccgattttggttgacacggaaaaca-aaaaaagttttcttttgtacaaaaaagatat---aatctaatgtcagatctacaatcaat 46387744  T
Q  118 tcgaggcaaattttcaatttcaaat-------actcttatactgtcattcactactctttcataatttaatactctctc 189  Q
    | |||||||||||||||||||||||       ||||||||| |||||||||||||||||||||||||||||||||||||    
T  46387743 tggaggcaaattttcaatttcaaatttcaaatactcttatattgtcattcactactctttcataatttaatactctctc 46387665  T

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Target: chr1; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 19 - 192
Target Start/End: Complemental strand, 4297167 - 4296990
Alignment:
Q  19 ccaactaaataaatccgatgttggttgacacagaaaacggaaaaaagttttcttttgtacaaaaaagatactccaattgattgt-aggtctgcaatcaat 117  Q
    ||||||||||||||||||| ||||||||||| |||||| |||||||||||||||||||||||||||||||    |||  | ||| || ||| ||||||||    
T  4297167 ccaactaaataaatccgattttggttgacacggaaaac-gaaaaaagttttcttttgtacaaaaaagata---taatctaatgtcagatctacaatcaat 4297072  T
Q  118 tcgaggcaaattttc-------aatttcaaatactcttatactgtcattcactactctttcataatttaatactctctcatt 192  Q
    | ||||| |||||||       ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  4297071 tggaggcgaattttcaatttcaaatttcaaatactcttatattgtcattcactactccttcataatttaatactctctcatt 4296990  T

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Target: chr4 (Bit Score: 82; Significance: 7e-39; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 19 - 192
Target Start/End: Complemental strand, 36040642 - 36040465
Alignment:
Q  19 ccaactaaataaatccgatgttggttgacacagaaaacggaaaaaagttttcttttgtacaaaaaagatactccaattgattgt-aggtctgcaatcaat 117  Q
    ||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||    |||  | ||| || |||  |||||||    
T  36040642 ccaactaaataaatccgattttggttgacacggaaaacg-aaaaaagttttcttttgtacaaaaaagatat---aatctaatgtcagatctagaatcaat 36040547  T
Q  118 tcgaggcaaattttcaatttcaaat-------actcttatactgtcattcactactctttcataatttaatactctctcatt 192  Q
    | |||||||||||||||||||||||       ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  36040546 tggaggcaaattttcaatttcaaatttcaaatactcttatattgtcattcactactctttcataatttaatactctctcatt 36040465  T

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Target: chr6 (Bit Score: 67; Significance: 6e-30; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 19 - 192
Target Start/End: Complemental strand, 18273037 - 18272859
Alignment:
Q  19 ccaactaaataaatccgatgttggttgacacagaaaacggaaaaaagttttcttttgtacaaaaaagatactccaattgattgt-aggtctgcaatcaat 117  Q
    ||||||||||||||||||| ||||||||||| |||||| |||||||||||||||||||||||||||||||    |||  | ||| |  ||| |||| ||     
T  18273037 ccaactaaataaatccgattttggttgacacggaaaac-gaaaaaagttttcttttgtacaaaaaagata---taatctaatgtcatatctacaatgaag 18272942  T
Q  118 tcgaggcaaattttc-------aatttcaaatactcttat-actgtcattcactactctttcataatttaatactctctcatt 192  Q
    | |||||||||||||       |||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||    
T  18272941 tggaggcaaattttcaatttcaaatttcaaatactcttataattgtcattcactactctttcataatttaatactctctcatt 18272859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 31 - 192
Target Start/End: Complemental strand, 27831358 - 27831193
Alignment:
Q  31 atccgatgttggttgacacagaaaacggaaaaaagttttcttttgtacaaaaaagatactccaattgattgt-aggtctgcaatcaattcgaggcaaatt 129  Q
    ||||||| ||||||||||| ||||||| |||||||||||||||||| |||||||||||    |||  | ||| || ||| ||||||||| ||| ||||||    
T  27831358 atccgattttggttgacaccgaaaacg-aaaaaagttttcttttgttcaaaaaagatat---aatctaatgtcagatctacaatcaattggagacaaatt 27831263  T
Q  130 ttcaatttcaaat-------actcttatactgtcattcactactctttcataatttaatactctctcatt 192  Q
    |||||||||||||       ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  27831262 ttcaatttcaaatttcaaatactcttatattgtcattcactactctttcataatttaatactctctcatt 27831193  T

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Target: chr7 (Bit Score: 58; Significance: 1e-24; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 19 - 92
Target Start/End: Complemental strand, 46373351 - 46373279
Alignment:
Q  19 ccaactaaataaatccgatgttggttgacacagaaaacggaaaaaagttttcttttgtacaaaaaagatactcc 92  Q
    ||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||    
T  46373351 ccaactaaataaatccgattttggttgacacggaaaacg-aaaaaagttttcttttgtacaaaaaagatactcc 46373279  T

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Target: chr7; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 133 - 192
Target Start/End: Complemental strand, 29054578 - 29054519
Alignment:
Q  133 aatttcaaatactcttatactgtcattcactactctttcataatttaatactctctcatt 192  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  29054578 aatttcaaatactcttatattgtcattcactactctttcataatttaatactctctcatt 29054519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 133 - 192
Target Start/End: Complemental strand, 46372950 - 46372891
Alignment:
Q  133 aatttcaaatactcttatactgtcattcactactctttcataatttaatactctctcatt 192  Q
    |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||    
T  46372950 aatttcaaatactcctatattgtcattcactactctttcataatttaatactctctcatt 46372891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 20 - 192
Target Start/End: Original strand, 12007381 - 12007549
Alignment:
Q  20 caactaaataaatccgatgttggttgacacagaaaacggaaaaaagttttcttttgtacaaaaaagatactccaattgattgtaggtctgcaatcaattc 119  Q
    |||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||| ||||         ||   || ||| ||| |||||     
T  12007381 caactaaataaatccgattttggttgacaccgaaaacg-aaaaaagttttcttttgtacaaaaa-gata---------atgtcagatctacaaacaattg 12007469  T
Q  120 gaggcaaattttcaatt-------tcaaatactcttatactgtcattcactactctttcataatttaatactctctcatt 192  Q
    |||| ||||||||||||       ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||    
T  12007470 gaggtaaattttcaatttcaaatttcaaatactcttatattgtcattcactgctctttcataatttaatactctctcatt 12007549  T

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