View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10346_low_7 (Length: 539)
Name: NF10346_low_7
Description: NF10346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10346_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 508; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 508; E-Value: 0
Query Start/End: Original strand, 1 - 520
Target Start/End: Complemental strand, 51197039 - 51196520
Alignment:
| Q |
1 |
aagaacctataaggatggaataccatatgtttgagaagaatacattttgcaatggggcagcgtttgtgcctagagatggaggtgtcgaagaagatgatgg |
100 |
Q |
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| T |
51197039 |
aagaacctataaggatggaataccatatgtttgagaagaatacattttgcaatggggcagcgtttgtgcctagagatggaggtgtcgaagaagatgatgg |
51196940 |
T |
|
| Q |
101 |
ttggatcattacttttgttcacaatgaagatactaacacatctcaagtaggttgagtagctttgtattcttgaaattaattacacttgttgaaaattagg |
200 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51196939 |
tttgatcattacttttgttcacaatgaagatactaacacatctcaagtaggttgagtagctttgtattcttgaaattaattacacttgttgaaaattagg |
51196840 |
T |
|
| Q |
201 |
atagttattaactcatttatcaattttctttcaggttcatataatcgatacaaagaatttttctggcgagacggttgccaaaattgaaattcctttcaga |
300 |
Q |
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| T |
51196839 |
atagttattaactcatttatcgattttctttcaggttcatataatcgatacaaagaatttttctggcgagacggttgccaaaattgaaattcctttcaga |
51196740 |
T |
|
| Q |
301 |
gttccatatgggtttcatggagccttcatgccaatctcattccaggattcttattaaatgcatttgtttatatatcaacatatatgccttaaaacctgag |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51196739 |
gttccatatgggtttcatggagccttcatgccaatctcattccaggattcttattaaatgcatttgtttatatatcaacatatatgccttaaaacctgag |
51196640 |
T |
|
| Q |
401 |
atcatattactaaattttaaaaatgcagcaactgtgttagtagagtaactaaataaacttcattcatccttttgttcatggattttaagattcatagtgt |
500 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51196639 |
atcatattactaaattttgaaaatgcagcaactgtgttagtagagtaactaaataaacttcattcatccttttgttcatggattttaagattcatagtgt |
51196540 |
T |
|
| Q |
501 |
ttctctttgtatgttgttat |
520 |
Q |
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|||||||||||||||||||| |
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| T |
51196539 |
ttctctttgtatgttgttat |
51196520 |
T |
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