View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10346_low_70 (Length: 208)
Name: NF10346_low_70
Description: NF10346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10346_low_70 |
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Alignment Details
Target: chr4 (Bit Score: 159; Significance: 7e-85; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 20 - 198
Target Start/End: Complemental strand, 4117048 - 4116870
Alignment:
| Q |
20 |
tcaattgttagtaaacatagatttactgatatgttagtgtcgtttgtaactaggcaagatttgctttgagtaatcaccattaacattgttctaaaagtgg |
119 |
Q |
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| T |
4117048 |
tcaattgttagtaaacatagatttactgatatgttagtgtcgtttgtaactaggcaagatttgctttgagtaatcaccgttaacattattctaaaagtgg |
4116949 |
T |
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| Q |
120 |
catctttcttattcaatctatatgtgccattttgatattaatttagctgttcatatatatttgttttgcatctgtgctc |
198 |
Q |
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| T |
4116948 |
catctttcttattcaatctatatgtgccattttgatattagtttagctgttcgtatatatttgttttgcatttgtgctc |
4116870 |
T |
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Target: chr5 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 20 - 184
Target Start/End: Complemental strand, 21156336 - 21156172
Alignment:
| Q |
20 |
tcaattgttagtaaacatagatttactgatatgttagtgtcgtttgtaactaggcaagatttgctttgagtaatcaccattaacattgttctaaaagtgg |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21156336 |
tcaattgttagtaaacatagatttactgatatgttagtgtcgtttgtaactaggcaagatttgctttgagtaatcaccattaacattgttctaaaagtgg |
21156237 |
T |
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| Q |
120 |
catctttcttattcaatctatatgtgccattttgatattaatttagctgttcatatatatttgtt |
184 |
Q |
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||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |
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| T |
21156236 |
catctttcttattcaatctatatgtgccactttgatattagtttagctgttcatatatatttgtt |
21156172 |
T |
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