View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10346_low_9 (Length: 506)
Name: NF10346_low_9
Description: NF10346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10346_low_9 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 170; Significance: 5e-91; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 15 - 192
Target Start/End: Original strand, 770438 - 770615
Alignment:
| Q |
15 |
agttaccatcatcttttcaacggtcattcgagtctcagaatccaggtcaccaagtttgctgcttgcaggttcaactttttgggtgttaatttcaggatca |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
770438 |
agttaccatcatcttttcaacggtcattcgagtctcagaatccaggtcaccaagtttgctgcttgcaggttcaactttttgggtgttaatttcaggatca |
770537 |
T |
|
| Q |
115 |
cccttcactagacatttccaccagtccatttgatcatgcttggttaaaagaatagaaactgtattctgatcctctgca |
192 |
Q |
| |
|
||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
770538 |
cccttaacaagacatttccaccagtccatttgatcatgcttggttaaaagaatagaaactgtattctgatcctctgca |
770615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 15 - 360
Target Start/End: Complemental strand, 780928 - 780584
Alignment:
| Q |
15 |
agttaccatcatcttttcaacggtcattcgagtctcagaatccaggtcaccaagtttgctgcttgcaggttcaactttttgggtgttaatttcaggatca |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
780928 |
agttaccatcatcttttcaacggtcattcgagtctcggaatccagttcaccaagtttgctgctctcaggttcaactttttgggtgttaattagaggatca |
780829 |
T |
|
| Q |
115 |
cccttcactagacatttccaccagtccatttgatcatgcttggttaaaagaatagaaactgtattctgatcctctgcaaagataggttac-ccagaatgt |
213 |
Q |
| |
|
||||| || | ||||||||||||||||||||||||||| |||||||||||||||||||||||| | |||||||||||||| |||| || | | ||| |
|
|
| T |
780828 |
ccctttaccaaacatttccaccagtccatttgatcatgtttggttaaaagaatagaaactgtactttgatcctctgcaaacatagttttcaaaataatta |
780729 |
T |
|
| Q |
214 |
tc---acacaaaaatttaaaaatatcaaatcaatcatgatgctaatgaattatggtcacctaaaaaaggattttctacaaacacaatttag---tagctt |
307 |
Q |
| |
|
| |||| ||||||||||| ||||||||| |||||| ||||||||||||| ||||||||||||||| ||||| |||||||| ||| |
|
|
| T |
780728 |
gcaaaacaccaaaatttaaaagtatcaaatccatcatg--------gaattatggtcacataaaaaaggattttccacaaatgcaatttagtaatagtca |
780637 |
T |
|
| Q |
308 |
catacctatgctccaataacattcatcaggcttgatagatttatatagctccc |
360 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| ||||||| ||||||| |
|
|
| T |
780636 |
aatacctatgctccaataacattcatcagccttgataaatttatacagctccc |
780584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 15 - 190
Target Start/End: Complemental strand, 785676 - 785501
Alignment:
| Q |
15 |
agttaccatcatcttttcaacggtcattcgagtctcagaatccaggtcaccaagtttgctgcttgcaggttcaactttttgggtgttaatttcaggatca |
114 |
Q |
| |
|
||||||||||||||||||||| ||| ||||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
785676 |
agttaccatcatcttttcaacagtctgtcgagtctcaggatcaaggtcaccaagtttgctgctctcaggttcaactttttgggtgttaatttcaggatca |
785577 |
T |
|
| Q |
115 |
cccttcactagacatttccaccagtccatttgatcatgcttggttaaaagaatagaaactgtattctgatcctctg |
190 |
Q |
| |
|
||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
785576 |
cccttaacgagacatttccaccagtccatttgatcatgtttggttaaaagaatagaaagtgtattctgatcctctg |
785501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 222 - 366
Target Start/End: Complemental strand, 785416 - 785272
Alignment:
| Q |
222 |
aaatttaaaaatatcaaatcaatcatgatgctaatgaattatggtcacctaaaaaaggattttctacaaacacaatttagtagcttcatacctatgctcc |
321 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||| || ||||||||| |||||| |||||||| ||||| |||||||||| |||||||||||||||| |
|
|
| T |
785416 |
aaatttaaaaatatcaaatccatcatgatcctaacgagctatggtcacttaaaaagggattttccacaaaagaaatttagtagtttcatacctatgctcc |
785317 |
T |
|
| Q |
322 |
aataacattcatcaggcttgatagatttatatagctccctctgag |
366 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
785316 |
aataacaatcatcaggcttgatagatttatatagctccccctgag |
785272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 278 - 366
Target Start/End: Original strand, 770695 - 770783
Alignment:
| Q |
278 |
ggattttctacaaacacaatttagtagcttcatacctatgctccaataacattcatcaggcttgatagatttatatagctccctctgag |
366 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
770695 |
ggattttctacaaacacaatttagtagtttcatacctatgctccaataacattcatcaggcttgatagatttatatagctccctctgag |
770783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 451 - 496
Target Start/End: Complemental strand, 780424 - 780379
Alignment:
| Q |
451 |
tataactgagtaaaagcttacatcaataattggtggctgccctttg |
496 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
780424 |
tataactgagtaaaagcttacatcaataattggtggctgccctttg |
780379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 451 - 496
Target Start/End: Original strand, 770921 - 770966
Alignment:
| Q |
451 |
tataactgagtaaaagcttacatcaataattggtggctgccctttg |
496 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
770921 |
tataactgagtaaatgcttacatcaataattggtggctgccctttg |
770966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 460 - 496
Target Start/End: Complemental strand, 785110 - 785074
Alignment:
| Q |
460 |
gtaaaagcttacatcaataattggtggctgccctttg |
496 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
785110 |
gtaaaagcttacatcaataattggtggctgccctttg |
785074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University