View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10347_high_12 (Length: 301)
Name: NF10347_high_12
Description: NF10347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10347_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 54276829 - 54276556
Alignment:
| Q |
1 |
aagaagagaaaacaagtttggttaccagagtagttatgaggaagagggagagtagttccttcgagcaaccttcctcgaaaatgcgattgctgtaatggta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54276829 |
aagaagagaaaacaagtttggttaccagagtagttatgaggaagagggagagtagttccttcgagcaaccttcctcgaaaatgcgattgctgtaatggta |
54276730 |
T |
|
| Q |
101 |
aaccgtcttctccgacgacgccggtaggtttaggtttgaaatactgagagacttcagtgggaccatcgtgcttgatgcagcagggaagtagatgaacacg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54276729 |
aaccgtcttctccgacgacgccggtaggtttaggtttgaaatactgagagacttcggtgggaccatcgtgcttgatgcagcagggaagtagatgaacacg |
54276630 |
T |
|
| Q |
201 |
cccactcagatcctcgataccgtctcgctttaggcctatcttcgcctccccgcccttttccatctctctcgccg |
274 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
54276629 |
cccactcagatcctcgataccgtctcgctttaggtctatcttcgcctccccgcccttttccatctctctcgccg |
54276556 |
T |
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