View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10347_high_3 (Length: 457)
Name: NF10347_high_3
Description: NF10347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10347_high_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 414
Target Start/End: Original strand, 12165958 - 12166366
Alignment:
| Q |
1 |
aacattttggtgtaacttaaccaaacccataatagttcgtcctgaaccaaattgaactgatgtaaaaacttgatggaacagaacaattatgtgttttcaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |
|
|
| T |
12165958 |
aacattttggtgtaacttaaccaaacccataatagttcgtcctgaaccaaattgaactgatgttaaaatttgatggaacagaacaattatgtgttttcaa |
12166057 |
T |
|
| Q |
101 |
atagtaactacnnnnnnncgtccttaattttctacaaaggtagttgcggttttattttccttgtcnnnnnnnnnnnncagcaactacctttatataaaat |
200 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| ||| |||||||||||||||||| || || ||||||||||| || ||||| |
|
|
| T |
12166058 |
atagtaactactttttttcgtccttaattttctacaaagatagatgcggttttattttccttatcaaaaataaaaaacaacaactacctttgtaaaaaat |
12166157 |
T |
|
| Q |
201 |
taaattatacattcttaaactgaactatttctatgaactaaactattgtatgttgcatttttcaaaccaaagttaaaaggcacacagtttgaacattaac |
300 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||| ||||| |||||| |
|
|
| T |
12166158 |
taaattatacattcttgaactgaactatttctatg----aaactattgaatgttgcatttttcaaaccaaagtt-aaaggcacacattttgagcattaat |
12166252 |
T |
|
| Q |
301 |
cgattttggcctatnnnnnnnnnnnnnnnnnnnngaattaaaccgtgaaggataagtcagttcatgttctgtccttcacggttcttttcaatatggttta |
400 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
12166253 |
cgattttggcctataaaaaaaaccaaaccgaaaagaattaaaccgtgaaggataagtcagttcatgttcggtccttcacggttcttttcaatatggttta |
12166352 |
T |
|
| Q |
401 |
gtaattgatttcaa |
414 |
Q |
| |
|
| |||||||||||| |
|
|
| T |
12166353 |
gcaattgatttcaa |
12166366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University