View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10347_high_5 (Length: 417)
Name: NF10347_high_5
Description: NF10347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10347_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 1 - 398
Target Start/End: Complemental strand, 28370753 - 28370338
Alignment:
| Q |
1 |
aattatcaacgaaaaaagaggttagatcaacgaaattcaacaagaagcatagttgaaacttaatgtatgtgtgactttcggacacagtcaccgagtagaa |
100 |
Q |
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| T |
28370753 |
aattatcaacgaaaaaagaggttagatcaacgaaattcaacaagaagcatagttgaaacttaatgtatgtgtgactttcggacacagtcaccgagtagaa |
28370654 |
T |
|
| Q |
101 |
gaagaagaa---tcaaattgaaagggaatgtttggagtgaaaagaaaatcaactttagtgggtttggcttttctaatgttcatgggtattgctgtttatt |
197 |
Q |
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| T |
28370653 |
gaagaagaagaatcaaattgaaagggaatgtttggagtgaaaagaaaatcaactttagtgggtttggcttttctaatgttcatgggtattgctgtttatt |
28370554 |
T |
|
| Q |
198 |
tcagactttgggctattgactacaacatttcaatcgatgattctgagctcttaaggtacgttcc---------------ttgatttgaaacacaaattga |
282 |
Q |
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| T |
28370553 |
tcagactttgggctattgactacaacatttcaatcgatgattctgagctcttaaggtacgttcctcttcttcccatcatttgatttgaaacacaaattga |
28370454 |
T |
|
| Q |
283 |
tttgaaacgaaattgtgatctttgagttcccatatctttatactgatttgaattcacactgctgagagaaatttttgttttgtgattgatgggatgcttc |
382 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||| |
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| T |
28370453 |
ttcgaaacgaaattgtgatctttgagttcccatatctttatactgatttgaattcacactgctgaaataaagttttgttttgtgattgatgggatgcttc |
28370354 |
T |
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| Q |
383 |
agtctgtatttcaatt |
398 |
Q |
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|||||||||||||||| |
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| T |
28370353 |
agtctgtatttcaatt |
28370338 |
T |
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