View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10347_high_9 (Length: 343)
Name: NF10347_high_9
Description: NF10347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10347_high_9 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 6 - 343
Target Start/End: Complemental strand, 2460126 - 2459786
Alignment:
| Q |
6 |
aggaaaaaggtaaattatttactatagttatgttgtgtaccactcaaaaccgcgtagagcattgaatgtgtagctctattacactgggaaagctcaattt |
105 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2460126 |
aggaaaaagctaaattatttactatagttatgttgtgtaccactcaaaaccgcgtagagcattgaatgtgtagctctattacactgggaaagctcaattt |
2460027 |
T |
|
| Q |
106 |
tatttcagcttttaaagtttctataaattaacacaaacatgtcattaattgtaaatttgtgatatagctgacttttgcaagaaagc---taattaagcta |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
2460026 |
tatttcagcttttaaagtttctataaattaacacaaacatgtcattaattgtaaatttgtgatatagctgacttttgcaagaaagctagtaattaagcta |
2459927 |
T |
|
| Q |
203 |
tcaccattatgtctttctatttgcctacctggtgatcaccaatgaacaagccctttctagatactttaacttgtctataaaatcaattaattgcatttat |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2459926 |
tcaccattatgtctttctatttgcctacctggtgatcaccaatgaacaagccctttctagatactttaacttgtctataaaatcaattaattgcatttat |
2459827 |
T |
|
| Q |
303 |
attttgttaattagacagtgactaaaactgacacctttgct |
343 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
2459826 |
attttgttaattagacagtgactaaaactgacacccttgct |
2459786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University