View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10347_low_1 (Length: 626)

Name: NF10347_low_1
Description: NF10347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10347_low_1
NF10347_low_1
[»] chr4 (3 HSPs)
chr4 (10-619)||(52350450-52351060)
chr4 (381-520)||(20303938-20304076)
chr4 (392-518)||(20298067-20298193)
[»] chr5 (14 HSPs)
chr5 (1-520)||(30473961-30474484)
chr5 (381-518)||(30481989-30482126)
chr5 (414-518)||(30398671-30398775)
chr5 (381-516)||(30434481-30434616)
chr5 (381-517)||(30339834-30339970)
chr5 (382-520)||(30429526-30429664)
chr5 (381-518)||(30243681-30243818)
chr5 (33-110)||(30429948-30430025)
chr5 (381-516)||(29870845-29870980)
chr5 (33-107)||(30522657-30522731)
chr5 (382-520)||(30523010-30523148)
chr5 (33-107)||(30562997-30563071)
chr5 (382-520)||(30563350-30563488)
chr5 (381-441)||(30395902-30395962)
[»] chr7 (1 HSPs)
chr7 (392-518)||(26705920-26706046)


Alignment Details
Target: chr4 (Bit Score: 591; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 591; E-Value: 0
Query Start/End: Original strand, 10 - 619
Target Start/End: Complemental strand, 52351060 - 52350450
Alignment:
Q  10 cgtctttctgatttgaccatttgtggttgccctaaacttgtgttgcaattccttccatcccttaaagacctcattgtaattggatgtaacagtgagttac 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  52351060 cgtctttctgatttgaccatttgtggttgccctaaacttgtgttgcaattccttccatcccttaaagacctcattgtaattggatgtaacagtcagttac 52350961  T
Q  110 taaggccaatatctagtttccattgtcttaccacccttctgcttagtgaaggtaacaaaatgacatcctttccagaaggcatgttgagaaacttgacttg 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52350960 taaggccaatatctagtttccattgtcttaccacccttctgcttagtgaaggtaacaaaatgacatcctttccagaaggcatgttgagaaacttgacttg 52350861  T
Q  210 tctgcaaactcttatactaactaatttcccgaaattaaaggaactaccaaatgaacccttaagcctggctttagaacgtctgcaa-tttctcgttgtggt 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  52350860 tctgcaaactcttatactaactaatttcccgaaattaaaggaactaccaaatgaacccttaagcctggctttagaacgtctgcaaatttctcgttgtggt 52350761  T
Q  309 gaccttgagtcttcaccggagcaaatgttggaaggtcttcaatcccttcaaacaattgaaatatctagttgtggattgagatccttgccagaatgtattc 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52350760 gaccttgagtcttcaccggagcaaatgttggaaggtcttcaatcccttcgaacaattgaaatatctagttgtggattgagatccttgccagaatgtattc 52350661  T
Q  409 gaaatctcacttcacttgaggtactgactatttgtgattgcccaacattaaaggagcgatgtaatgaaggaacaggggaggactatgacaaaatagcgca 508  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52350660 gaaatctcacttcacttgaggtactgactatttgtgattgcccaacattaaaggagcgatgtaatgaaggaacaggggaggactatgacaaaatagcgca 52350561  T
Q  509 cattccaaaatttggtattgattagaataaaaaagcagacatgtttgaagaacattgagtcaacttgtttattcttatatacttccaccaccactgttat 608  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52350560 cattccaaaatttggtattgaatagaataaaaaagcagacatgtttgaagaacattgagtcaacttgtttattcttatatacttccaccaccactgttat 52350461  T
Q  609 tacctttgctt 619  Q
    |||||||||||    
T  52350460 tacctttgctt 52350450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 381 - 520
Target Start/End: Original strand, 20303938 - 20304076
Alignment:
Q  381 ggattgagatccttgccagaatgtattcgaaatctcacttcacttgaggtactgactatttgtgattgcccaacattaaaggagcgatgtaatgaaggaa 480  Q
    |||||||||| |||||| ||| ||||||||   |||||||||||||||||  ||| ||||| ||| ||||||||||||||||| || || ||    ||||    
T  20303938 ggattgagatgcttgcctgaaggtattcgattcctcacttcacttgaggttttgagtatttatgaatgcccaacattaaaggaacggtgcaagacgggaa 20304037  T
Q  481 caggggaggactatgacaaaatagcgcacattccaaaatt 520  Q
    |||| ||||| |  ||||| |||||||| |||||||||||    
T  20304038 caggcgagga-ttggacaagatagcgcatattccaaaatt 20304076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 392 - 518
Target Start/End: Original strand, 20298067 - 20298193
Alignment:
Q  392 cttgccagaatgtattcgaaatctcacttcacttgaggtactgactatttgtgattgcccaacattaaaggagcgatgtaatgaaggaacaggggaggac 491  Q
    |||||||||| | |||| | | |||||||| |||||| | ||||||||  || ||||||| |||||||||   ||||| || || ||||||||||||||     
T  20298067 cttgccagaaggcattcaacacctcacttctcttgagcttctgactatcggttattgccccacattaaagttacgatgcaaagagggaacaggggaggat 20298166  T
Q  492 tatgacaaaatagcgcacattccaaaa 518  Q
    |  ||||| ||||| || |||||||||    
T  20298167 tgggacaagatagctcatattccaaaa 20298193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 90; Significance: 3e-43; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 1 - 520
Target Start/End: Complemental strand, 30474484 - 30473961
Alignment:
Q  1 atgttccctcgtctttctgatttgaccatttgtggttgccctaaacttgtgttgcaattccttccatcccttaaagacctcattgtaattggatgtaaca 100  Q
    ||||||| || ||||||| |||||||||||  || |||||||||||||||||||| || |||||||||||||||||||||||||||| ||||||||||||    
T  30474484 atgttccttcttctttctaatttgaccattattgattgccctaaacttgtgttgccatgccttccatcccttaaagacctcattgtatttggatgtaaca 30474385  T
Q  101 gtgagttactaaggccaatatctagtttccattgtcttaccacccttctgcttagtgaaggtaacaaaatgacatcctttccagaaggcatgttgagaaa 200  Q
     ||||||||| ||  |||| || | ||||  | |||||||||||||||  |||  | | ||| |  |  |||  | |||||| || ||  |||| |||||    
T  30474384 atgagttactgagatcaatctccaatttctgtagtcttaccacccttcaccttcttaacggtgaagacgtgatttgctttcctgacggtttgttaagaaa 30474285  T
Q  201 cttgacttgtctgcaaactcttatactaactaatttcccgaaattaaaggaactaccaaatgaacccttaagcctggctttagaacgtctg-caatttct 299  Q
    |||||||||||| | || | | | | |  |||||||||| ||||| ||| ||||||||||||||||||| | ||| |  || ||  |||||   || |||    
T  30474284 cttgacttgtcttcgaagtttgaaaatttctaatttcccaaaattgaagaaactaccaaatgaacccttcaacctagtgttggagtgtctgagtatctct 30474185  T
Q  300 cgttgtggtgaccttgagtcttcaccggagcaaatgttggaaggtcttcaatcccttcaaacaattgaaat---atctagttgtggattgagatccttgc 396  Q
      ||||||||| |||||||||  |||||| ||||  | ||||||||||| ||| |||| ||| ||||| ||    | | || | |||||||||||||| |    
T  30474184 tcttgtggtgagcttgagtctataccggaacaaacatgggaaggtcttcgatctcttcgaactattgatattggttattgtggaggattgagatcctttc 30474085  T
Q  397 cagaatgtattcgaaatctcacttcacttgaggtactgactatttgtgattgcccaacattaaaggagcgatgtaatgaaggaacaggggaggactatga 496  Q
    | |||| ||||| | | ||||||||||||||| |  |||  ||| | | |||||||||||||||||||||||  ||  ||||||| || |||||||  ||    
T  30474084 ccgaatctattcaacacctcacttcacttgagtttttgaaaattcgaggttgcccaacattaaaggagcgattgaagaaaggaaccggtgaggactggga 30473985  T
Q  497 caaaatagcgcacattccaaaatt 520  Q
    ||| ||||||||||||||||||||    
T  30473984 caagatagcgcacattccaaaatt 30473961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 381 - 518
Target Start/End: Complemental strand, 30482126 - 30481989
Alignment:
Q  381 ggattgagatccttgccagaatgtattcgaaatctcacttcacttgaggtactgactatttgtgattgcccaacattaaaggagcgatgtaatgaaggaa 480  Q
    |||||| ||| |||||| ||  |||||||| | |||||||| |||||||| ||||| ||||| || |||||||||||| |||| ||||| || || ||||    
T  30482126 ggattgcgatgcttgccggagggtattcgacacctcacttctcttgaggttctgacaatttgggaatgcccaacattagaggaacgatgcaaagagggaa 30482027  T
Q  481 caggggaggactatgacaaaatagcgcacattccaaaa 518  Q
    || ||||||| |  ||||| ||||| || |||||||||    
T  30482026 catgggaggattgggacaagatagctcatattccaaaa 30481989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 414 - 518
Target Start/End: Complemental strand, 30398775 - 30398671
Alignment:
Q  414 ctcacttcacttgaggtactgactatttgtgattgcccaacattaaaggagcgatgtaatgaaggaacaggggaggactatgacaaaatagcgcacattc 513  Q
    |||||||| |||||||| ||||| ||   ||||||||||||||||||||| ||||| || || |||||||||||||| |  ||||| ||||| || ||||    
T  30398775 ctcacttctcttgaggttctgacaatcaatgattgcccaacattaaaggaacgatgcaaagagggaacaggggaggattgggacaagatagctcatattc 30398676  T
Q  514 caaaa 518  Q
    |||||    
T  30398675 caaaa 30398671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 381 - 516
Target Start/End: Complemental strand, 30434616 - 30434481
Alignment:
Q  381 ggattgagatccttgccagaatgtattcgaaatctcacttcacttgaggtactgactatttgtgattgcccaacattaaaggagcgatgtaatgaaggaa 480  Q
    |||||| ||| |||||| ||  |||||||| | |||||||| |||||| | ||| ||||   ||||||||||||||||||||| ||||| || || ||||    
T  30434616 ggattgcgatgcttgccggagggtattcgacacctcacttctcttgagcttctgtctatcattgattgcccaacattaaaggaacgatgcaaagagggaa 30434517  T
Q  481 caggggaggactatgacaaaatagcgcacattccaa 516  Q
    |||||||||| |  ||||| ||||| || |||||||    
T  30434516 caggggaggattgggacaagatagctcatattccaa 30434481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 381 - 517
Target Start/End: Original strand, 30339834 - 30339970
Alignment:
Q  381 ggattgagatccttgccagaatgtattcgaaatctcacttcacttgaggtactgactatttgtgattgcccaacattaaaggagcgatgtaatgaaggaa 480  Q
    |||||| ||| |||||| ||  |||||||| | |||||||| |||||| | ||||||||   | |||||||||||||| |||| ||||| || || ||||    
T  30339834 ggattgcgatgcttgccggagggtattcgacacctcacttctcttgagcttctgactatcattaattgcccaacattagaggaacgatgcaaagagggaa 30339933  T
Q  481 caggggaggactatgacaaaatagcgcacattccaaa 517  Q
    |||||||||| |  ||||| ||||| || ||||||||    
T  30339934 caggggaggattgggacaagatagctcatattccaaa 30339970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 382 - 520
Target Start/End: Complemental strand, 30429664 - 30429526
Alignment:
Q  382 gattgagatccttgccagaatgtattcgaaatctcacttcacttgaggtactgactatttgtgattgcccaacattaaaggagcgatgtaatgaaggaac 481  Q
    ||||||||| |||||||||| ||||||   | ||||| ||||||||||| ||| | |||| || ||||||| |  ||| |||||||||||| || ||||     
T  30429664 gattgagatgcttgccagaaggtattctgcacctcacatcacttgaggttctggcaatttatggttgcccagctgtaacggagcgatgtaaggagggaat 30429565  T
Q  482 aggggaggactatgacaaaatagcgcacattccaaaatt 520  Q
    ||| |||||||  ||||| ||||  |||||||| |||||    
T  30429564 aggagaggactgggacaagatagaacacattcctaaatt 30429526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 381 - 518
Target Start/End: Original strand, 30243681 - 30243818
Alignment:
Q  381 ggattgagatccttgccagaatgtattcgaaatctcacttcacttgaggtactgactatttgtgattgcccaacattaaaggagcgatgtaatgaaggaa 480  Q
    |||||| ||| |||||| ||  |||||||| | |||||||| ||||||||  ||| ||||| | | || ||||||||| |||| ||||| || || ||||    
T  30243681 ggattgcgatgcttgccggagggtattcgacacctcacttctcttgaggttttgaatatttataaatgtccaacattagaggaacgatgcaaagagggaa 30243780  T
Q  481 caggggaggactatgacaaaatagcgcacattccaaaa 518  Q
    |||||||||| |  ||||| ||||| || |||||||||    
T  30243781 caggggaggattgggacaagatagctcatattccaaaa 30243818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 33 - 110
Target Start/End: Complemental strand, 30430025 - 30429948
Alignment:
Q  33 tggttgccctaaacttgtgttgcaattccttccatcccttaaagacctcattgtaattggatgtaacagtgagttact 110  Q
    |||||||| |||||||| ||||| || |||| ||||  ||||||| |||||||||  ||||||||||| |||||||||    
T  30430025 tggttgccttaaacttgggttgccatgcctttcatcttttaaagaactcattgtagatggatgtaacaatgagttact 30429948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 381 - 516
Target Start/End: Complemental strand, 29870980 - 29870845
Alignment:
Q  381 ggattgagatccttgccagaatgtattcgaaatctcacttcacttgaggtactgactatttgtgattgcccaacattaaaggagcgatgtaatgaaggaa 480  Q
    |||||| ||| |||||| ||  |||||||| | ||||||||||||||| | ||| | |||   | ||||||||||||| |||| ||||| || || ||||    
T  29870980 ggattgcgatgcttgccggagggtattcgacacctcacttcacttgagcttctggcaattgagggttgcccaacattagaggaacgatgcaaagagggaa 29870881  T
Q  481 caggggaggactatgacaaaatagcgcacattccaa 516  Q
    |||||||||| |  ||||| ||||| || |||||||    
T  29870880 caggggaggattgggacaagatagctcatattccaa 29870845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 33 - 107
Target Start/End: Original strand, 30522657 - 30522731
Alignment:
Q  33 tggttgccctaaacttgtgttgcaattccttccatcccttaaagacctcattgtaattggatgtaacagtgagtt 107  Q
    ||||||||||||||||| ||||| |  |||| ||||  ||||||| |||||||||  ||||||||||| ||||||    
T  30522657 tggttgccctaaacttgggttgccacacctttcatcgtttaaagaactcattgtagatggatgtaacaatgagtt 30522731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 382 - 520
Target Start/End: Original strand, 30523010 - 30523148
Alignment:
Q  382 gattgagatccttgccagaatgtattcgaaatctcacttcacttgaggtactgactatttgtgattgcccaacattaaaggagcgatgtaatgaaggaac 481  Q
    ||||||||| |||||||||| |||||||  | ||||| ||||||||||| |||||  ||| || ||||||| |  ||   ||||||||||| |||| ||     
T  30523010 gattgagatgcttgccagaaggtattcgccacctcacatcacttgaggttctgacagtttatggttgcccagctgtagcagagcgatgtaaggaagaaat 30523109  T
Q  482 aggggaggactatgacaaaatagcgcacattccaaaatt 520  Q
    ||| |||||||  ||||  ||||  ||||||||||||||    
T  30523110 aggagaggactgggacatgatagaacacattccaaaatt 30523148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 33 - 107
Target Start/End: Original strand, 30562997 - 30563071
Alignment:
Q  33 tggttgccctaaacttgtgttgcaattccttccatcccttaaagacctcattgtaattggatgtaacagtgagtt 107  Q
    ||||||||||||||||| ||||| |  |||| ||||  ||||||| |||||||||  ||||||||||| ||||||    
T  30562997 tggttgccctaaacttgggttgccacacctttcatcgtttaaagaactcattgtagatggatgtaacaatgagtt 30563071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 382 - 520
Target Start/End: Original strand, 30563350 - 30563488
Alignment:
Q  382 gattgagatccttgccagaatgtattcgaaatctcacttcacttgaggtactgactatttgtgattgcccaacattaaaggagcgatgtaatgaaggaac 481  Q
    ||||||||| |||||||||| |||||||  | ||||| ||||||||||| |||||  ||| || ||||||| |  ||   ||||||||||| |||| ||     
T  30563350 gattgagatgcttgccagaaggtattcgccacctcacatcacttgaggttctgacagtttatggttgcccagctgtagcagagcgatgtaaggaagaaat 30563449  T
Q  482 aggggaggactatgacaaaatagcgcacattccaaaatt 520  Q
    ||| |||||||  ||||  ||||  ||||||||||||||    
T  30563450 aggagaggactgggacatgatagaacacattccaaaatt 30563488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 381 - 441
Target Start/End: Complemental strand, 30395962 - 30395902
Alignment:
Q  381 ggattgagatccttgccagaatgtattcgaaatctcacttcacttgaggtactgactattt 441  Q
    ||||||| |||||||| |||| |||||| |   ||||||||||||||||| ||||||||||    
T  30395962 ggattgaaatccttgcaagaaggtattccacgcctcacttcacttgaggttctgactattt 30395902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 392 - 518
Target Start/End: Complemental strand, 26706046 - 26705920
Alignment:
Q  392 cttgccagaatgtattcgaaatctcacttcacttgaggtactgactatttgtgattgcccaacattaaaggagcgatgtaatgaaggaacaggggaggac 491  Q
    |||||||||  |||||||| | |||||||| |||||| | ||||  |||||   ||||||||||||| |||| ||||| || || ||||||||||||||     
T  26706046 cttgccagagggtattcgacacctcacttctcttgagtttctgagaatttggagttgcccaacattagaggaacgatgcaaagagggaacaggggaggat 26705947  T
Q  492 tatgacaaaatagcgcacattccaaaa 518  Q
    |  ||||| ||||| || |||||||||    
T  26705946 tgggacaagatagctcatattccaaaa 26705920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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