View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10347_low_10 (Length: 400)
Name: NF10347_low_10
Description: NF10347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10347_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 365; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 1 - 381
Target Start/End: Original strand, 3017265 - 3017645
Alignment:
| Q |
1 |
caatgtttagatgtgggacttgggcattttctcgaatagcaattttttatagtcatacatgatatcatcttaagattcttataccgaagaatctgctttc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3017265 |
caatgtttagatgtgggacttgggcattttctcgaatagcaattttttatagtcatacatgatatcatcttaagattcttataccgaagaatctgctttc |
3017364 |
T |
|
| Q |
101 |
gaccgattggtggggttggtgttccatatggttatgaattttaatgaactatatcatcattgttcattgtttatgggttgaatttaatatgaatctatca |
200 |
Q |
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| T |
3017365 |
gaccgattggtagggttggtgttccatatggttatgaattttaatgaactatatcatcattgttcattgtttatgggttgaatttaatatgaatctatca |
3017464 |
T |
|
| Q |
201 |
ctagaagctgcagtaattgtaattgttgttgttgtctgtagtgaatgcaaaatgtgtgaacatgcttcttatcaactatgtttgaaactttcagagaata |
300 |
Q |
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| T |
3017465 |
ctagaagctgcagtaattgtaattgttgttgttgtctgtagtgaatgcaaaatgtgtgaacatgcttcttatcagctatgtttgaaactttcagagaata |
3017564 |
T |
|
| Q |
301 |
tcatccagaaattgttttctcgtccatggaagccataatggcccgtgttatcgaggaaagtgacgatatatctctctgctt |
381 |
Q |
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| T |
3017565 |
tcatccagaaattgttttctcgtccatggaagccataatggcccgtgttattgaggaaagtgacgatatatctctcggctt |
3017645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 245 - 375
Target Start/End: Original strand, 3020639 - 3020769
Alignment:
| Q |
245 |
atgcaaaatgtgtgaacatgcttcttatcaactatgtttgaaactttcagagaatatcatccagaaattgttttctcgtccatggaagccataatggccc |
344 |
Q |
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| T |
3020639 |
atgcaaaatatgtgaacatgcttcttatcagctctgtttgaaactttcagagaacatcatccagaaattgttttctcgtccatggaaaccataatgatcc |
3020738 |
T |
|
| Q |
345 |
gtgttatcgaggaaagtgacgatatatctct |
375 |
Q |
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||||| | ||||||||||||||||||||||| |
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| T |
3020739 |
gtgtttttgaggaaagtgacgatatatctct |
3020769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 3020416 - 3020545
Alignment:
| Q |
1 |
caatgtttagatgtgggacttgggcattttctcgaatagcaattttttatagtcatacatgatatcatcttaagattcttataccgaagaatctgctttc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| ||| ||| |||||||||||||| |
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| T |
3020416 |
caatgtttagatgtgggacttgggcattttctcgaatagcaattttttatagtcatgcatgatatcatcataagatgcttgtactgaagaatctgctttt |
3020515 |
T |
|
| Q |
101 |
gaccgattggtggggttggtgttccatatg |
130 |
Q |
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|||| | |||| ||| | |||||||||||| |
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| T |
3020516 |
gaccaaatggtagggctagtgttccatatg |
3020545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 245 - 340
Target Start/End: Original strand, 3033474 - 3033569
Alignment:
| Q |
245 |
atgcaaaatgtgtgaacatgcttcttatcaactatgtttgaaactttcagagaatatcatccagaaattgttttctcgtccatggaagccataatg |
340 |
Q |
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|||||||||||||||||||| |||| | || || |||||||||||||||| ||| |||||||||| | ||||||||||||||||||| | |||||| |
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| T |
3033474 |
atgcaaaatgtgtgaacatggttctaagcatctctgtttgaaactttcagggaacatcatccagataatgttttctcgtccatggaaactataatg |
3033569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 172 - 226
Target Start/End: Original strand, 3020542 - 3020596
Alignment:
| Q |
172 |
tatgggttgaatttaatatgaatctatcactagaagctgcagtaattgtaattgt |
226 |
Q |
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|||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
3020542 |
tatgagttgaatttaatatgaatctttcactagaagctgcagtaattgtaattgt |
3020596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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