View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10347_low_12 (Length: 360)

Name: NF10347_low_12
Description: NF10347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10347_low_12
NF10347_low_12
[»] chr2 (7 HSPs)
chr2 (1-330)||(37778398-37778727)
chr2 (1-330)||(22988226-22988557)
chr2 (8-223)||(40653036-40653249)
chr2 (200-328)||(3246383-3246508)
chr2 (269-328)||(29459892-29459951)
chr2 (283-328)||(26319153-26319198)
chr2 (280-317)||(26321204-26321241)
[»] chr8 (1 HSPs)
chr8 (1-330)||(32208508-32208837)
[»] chr4 (1 HSPs)
chr4 (1-318)||(34738223-34738537)
[»] scaffold0061 (2 HSPs)
scaffold0061 (121-318)||(50251-50445)
scaffold0061 (1-77)||(49966-50043)
[»] scaffold0017 (2 HSPs)
scaffold0017 (121-318)||(148189-148383)
scaffold0017 (1-77)||(148591-148668)
[»] chr6 (1 HSPs)
chr6 (200-328)||(8642181-8642306)
[»] chr3 (3 HSPs)
chr3 (269-328)||(3740721-3740780)
chr3 (62-104)||(21968658-21968700)
chr3 (62-104)||(21991094-21991136)


Alignment Details
Target: chr2 (Bit Score: 242; Significance: 1e-134; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 330
Target Start/End: Original strand, 37778398 - 37778727
Alignment:
Q  1 ttcattgtatatattgtgccttgagcaagttaaatcacatgtttggtctttgttctagatgttttttagggtgtttgataattgacaa-tatattaatat 99  Q
    |||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |||||||||||    
T  37778398 ttcattatatatattgtgccttgaacaaattaaatcacatgtttggtctttgttctagattttttttaaggtgtttgataattgacaaatatattaatat 37778497  T
Q  100 acatgttaacaatgnnnnnnngtggatttcttctttttattttatagaaaggtagatcatacggccaagatatatgcttatggttacattccaaaattat 199  Q
    ||||||||||||||       |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37778498 acatgttaacaatgaaataaagtggatttcttctttttagtttatagaaaggtagatcatacggccaagatatatgcttatggttacattccaaaattat 37778597  T
Q  200 ttattcctactctatccactttttgcctatnnnnnnnnnttgcattcatagttcgttagtcaaattttctacgaagctcctatgtatatatatttgtaac 299  Q
    ||||||||||||||||||||||||||||||         |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  37778598 ttattcctactctatccactttttgcctat-aaaaaaaattgcattcatagttcgttagacaaattttctacgaagctcctatgtatatatatttgtaac 37778696  T
Q  300 ttattttgtctcttccattccttcaatttta 330  Q
    |||||||||||||||||||||||||||||||    
T  37778697 ttattttgtctcttccattccttcaatttta 37778727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 330
Target Start/End: Complemental strand, 22988557 - 22988226
Alignment:
Q  1 ttcattgtatatattgtgccttgagcaagttaaatcacatgtttggtctttgttctagatgtttttt--agggtgtttgataattgacaa-tatattaat 97  Q
    |||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||  ||||||||||||||||||||| |||||||||    
T  22988557 ttcattatatatattgtgccttgaacaaattaaatcacatgtttggtctttgttctagattttttttttagggtgtttgataattgacaaatatattaat 22988458  T
Q  98 atacatgttaacaatgnnnnnnngtggatttcttctttttattttatagaaaggtagatcatacggccaagatatatgcttatggttacattccaaaatt 197  Q
    ||||||||||||||||       |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22988457 atacatgttaacaatgaaataaagtggatttcttctttttagtttatagaaaggtagatcatacggccaagatatatgcttatggttacattccaaaatt 22988358  T
Q  198 atttattcctactctatccactttttgcctatnnnnnnnnnttgcattcatagttcgttagtcaaattttctacgaagctcctatgtatatatatttgta 297  Q
    |||||||||||||||||| |||| ||||||||         |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  22988357 atttattcctactctatcgacttcttgcctat-aaaaaaaattgcattcatagttcgttagacaaattttctacgaagctcctatgtatatatatttgta 22988259  T
Q  298 acttattttgtctcttccattccttcaatttta 330  Q
    | |||||||||||||||||||||||||||||||    
T  22988258 atttattttgtctcttccattccttcaatttta 22988226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 8 - 223
Target Start/End: Complemental strand, 40653249 - 40653036
Alignment:
Q  8 tatatattgtgccttgagcaagttaaatcacatgtttggtctttgttctag-atgttttttagggtgtttgataattgaca--atatattaatatacatg 104  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||| | ||||||  ||||||||||||| |||    
T  40653249 tatatattgtgccttgaacaagttaaatcacatgtttggtctttgttctagaattttttttagggtgtttgacatttgacaatatatattaatataaatg 40653150  T
Q  105 ttaacaatgnnnnnnngtggatttcttctttttattttatagaaaggtagatcatacggccaagatatatgcttatggttacattccaaaattatttatt 204  Q
    |||| |||        ||||||||| || ||||||||||||||| |||||| |||||||| |||||||||| |||||||| |||| |||||    |||||    
T  40653149 ttaataat-caaaaaagtggatttcatcattttattttatagaagggtagaacatacggctaagatatatgtttatggttgcatttcaaaa----ttatt 40653055  T
Q  205 cctactctatccacttttt 223  Q
    | |||||||||||||||||    
T  40653054 cttactctatccacttttt 40653036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 200 - 328
Target Start/End: Original strand, 3246383 - 3246508
Alignment:
Q  200 ttattcctactctatccactttttgcctatnnnnnnnnnttgcattcatagttcgttagtcaaattttctacgaagctcctatgtatatatatttgtaac 299  Q
    |||||||||||||||||| |||||||||||         || |||| ||||||  |||| ||||||||  |||||||| |||||||||||||||||||||    
T  3246383 ttattcctactctatccattttttgcctataaagaaaa-ttccatttatagtttattaggcaaatttt--acgaagcttctatgtatatatatttgtaac 3246479  T
Q  300 ttattttgtctcttccattccttcaattt 328  Q
    |||||||||||||||||||||||||||||    
T  3246480 ttattttgtctcttccattccttcaattt 3246508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 269 - 328
Target Start/End: Original strand, 29459892 - 29459951
Alignment:
Q  269 tacgaagctcctatgtatatatatttgtaacttattttgtctcttccattccttcaattt 328  Q
    ||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  29459892 tacgaagcttctatgtatatatatttgtaacttattttttctcttccattccttcaattt 29459951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 283 - 328
Target Start/End: Original strand, 26319153 - 26319198
Alignment:
Q  283 gtatatatatttgtaacttattttgtctcttccattccttcaattt 328  Q
    |||||||||||||||| ||||||||||||||||||| |||||||||    
T  26319153 gtatatatatttgtaagttattttgtctcttccattacttcaattt 26319198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 317
Target Start/End: Original strand, 26321204 - 26321241
Alignment:
Q  280 tatgtatatatatttgtaacttattttgtctcttccat 317  Q
    ||||| ||||||||||||||||||||| ||||||||||    
T  26321204 tatgtgtatatatttgtaacttattttatctcttccat 26321241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 330
Target Start/End: Original strand, 32208508 - 32208837
Alignment:
Q  1 ttcattgtatatattgtgccttgagcaagttaaatcacatgtttggtctttgttctagatgttttttagggtgtttgataattgacaa-tatattaatat 99  Q
    |||||| ||||||||||||||||| |||   ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |||||||||||    
T  32208508 ttcattatatatattgtgccttgaacaaaccaaatcacatgtttggtctttgttctagattttttttagggtttttgataattgacaaatatattaatat 32208607  T
Q  100 acatgttaacaatgnnnnnnngtggatttcttctttttattttatagaaaggtagatcatacggccaagatatatgcttatggttacattccaaaattat 199  Q
    ||||||||||||||       |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  32208608 acatgttaacaatgaaataaagtggatttcttctttttagtttatagaaaggtagatcatacggccaagatatatgcttctggttacattccaaaattat 32208707  T
Q  200 ttattcctactctatccactttttgcctatnnnnnnnnnttgcattcatagttcgttagtcaaattttctacgaagctcctatgtatatatatttgtaac 299  Q
    |||||||||||||||||| |||||||||||         |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  32208708 ttattcctactctatccattttttgcctat-aaaaaaaattgcattcatagttcgttagacaaattttctacgaagctcctatgtatatatatttgtaac 32208806  T
Q  300 ttattttgtctcttccattccttcaatttta 330  Q
    ||| |||||||||||||||||||||||||||    
T  32208807 ttactttgtctcttccattccttcaatttta 32208837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 151; Significance: 8e-80; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 34738537 - 34738223
Alignment:
Q  1 ttcattgtatatattgtgccttgagcaagttaaatcacatgtttggtctttgttctag-atgttttttagggtgtttgataattgaca--atatattaat 97  Q
    |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| || |||||||| |||||||| ||||||||  ||||||||||    
T  34738537 ttcattatatatattgtgccttgaacaagttaaatcacatgtttggtctttgttctagaattttttttagagtgtttgacaattgacaatatatattaat 34738438  T
Q  98 atacatgttaacaatgnnnnnnngtggatttcttctttttattttatagaaaggtagatcatacggccaagatatatgcttatggttacattccaaaatt 197  Q
    |||||||||||||||        ||||||||| |||||||||||||||||| |||||| |||||||| ||||||||||||||||||| |||| |||||      
T  34738437 atacatgttaacaat-caaaaaagtggatttcatctttttattttatagaagggtagaacatacggctaagatatatgcttatggttgcatttcaaaa-- 34738341  T
Q  198 atttattcctactctatccactttttgcctatnnnnnnnnnttgcattc--atagttcgttagtcaaattttctacgaagctcctatgtatatatatttg 295  Q
      ||||||||||||||||||||||||| ||||         ||||||||  ||||||  |||| ||||||||||||||||||||||||||||||||||||    
T  34738340 --ttattcctactctatccactttttgtctat---aaaaaattgcattcatatagtttattagacaaattttctacgaagctcctatgtatatatatttg 34738246  T
Q  296 taacttattttgtctcttccatt 318  Q
    |||||||||||| ||||||||||    
T  34738245 taacttattttgactcttccatt 34738223  T

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Target: scaffold0061 (Bit Score: 84; Significance: 7e-40; HSPs: 2)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 121 - 318
Target Start/End: Original strand, 50251 - 50445
Alignment:
Q  121 gtggatttcttctttttattttatagaaaggtagatcatacggccaagatatatgcttatggttacattccaaaattatttattcctactctatccactt 220  Q
    ||||||||| |||||||||||||||||| |||||| || ||||| ||||||||||||||||||| |||| |||||    |||||| ||||||||||||||    
T  50251 gtggatttcatctttttattttatagaagggtagaacagacggctaagatatatgcttatggttgcatttcaaaa----ttattcttactctatccactt 50346  T
Q  221 tttgcctatnnnnnnnnnttgcattc--atagttcgttagtcaaattttctacgaagctcctatgtatatatatttgtaacttattttgtctcttccatt 318  Q
    |||| ||||         ||||||||  ||||||  ||||  ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  50347 tttgtctat-aaaaaaatttgcattcatatagtttattagagaaattttctacgaagctcctatgtatatatatttgtaacttattttgactcttccatt 50445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 49966 - 50043
Alignment:
Q  1 ttcattgtatatattgtgccttgagcaagttaaatcacatgtttggtctttgttctag-atgttttttagggtgtttg 77  Q
    |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||    
T  49966 ttcattatatatattgtgccttgaacaagttaaatcacatgtttggtctttgttctagaattttttttagggtgtttg 50043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 84; Significance: 7e-40; HSPs: 2)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 121 - 318
Target Start/End: Complemental strand, 148383 - 148189
Alignment:
Q  121 gtggatttcttctttttattttatagaaaggtagatcatacggccaagatatatgcttatggttacattccaaaattatttattcctactctatccactt 220  Q
    ||||||||| |||||||||||||||||| |||||| || ||||| ||||||||||||||||||| |||| |||||    |||||| ||||||||||||||    
T  148383 gtggatttcatctttttattttatagaagggtagaacagacggctaagatatatgcttatggttgcatttcaaaa----ttattcttactctatccactt 148288  T
Q  221 tttgcctatnnnnnnnnnttgcattc--atagttcgttagtcaaattttctacgaagctcctatgtatatatatttgtaacttattttgtctcttccatt 318  Q
    |||| ||||         ||||||||  ||||||  ||||  ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  148287 tttgtctat-aaaaaaatttgcattcatatagtttattagagaaattttctacgaagctcctatgtatatatatttgtaacttattttgactcttccatt 148189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 148668 - 148591
Alignment:
Q  1 ttcattgtatatattgtgccttgagcaagttaaatcacatgtttggtctttgttctag-atgttttttagggtgtttg 77  Q
    |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||    
T  148668 ttcattatatatattgtgccttgaacaagttaaatcacatgtttggtctttgttctagaattttttttagggtgtttg 148591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 200 - 328
Target Start/End: Complemental strand, 8642306 - 8642181
Alignment:
Q  200 ttattcctactctatccactttttgcctatnnnnnnnnnttgcattcatagttcgttagtcaaattttctacgaagctcctatgtatatatatttgtaac 299  Q
    |||||||||||||||||| |||||||||||         || |||| ||||||  |||| ||||||||  || ||||| ||||||||||||||||| |||    
T  8642306 ttattcctactctatccattttttgcctataaagaaaa-ttccatttatagtttattaggcaaatttt--acaaagcttctatgtatatatatttgcaac 8642210  T
Q  300 ttattttgtctcttccattccttcaattt 328  Q
    |||||||||||||||||||||||||||||    
T  8642209 ttattttgtctcttccattccttcaattt 8642181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 269 - 328
Target Start/End: Complemental strand, 3740780 - 3740721
Alignment:
Q  269 tacgaagctcctatgtatatatatttgtaacttattttgtctcttccattccttcaattt 328  Q
    ||||||||| ||||||||||||||||||||||| |||||||||| |||||||||||||||    
T  3740780 tacgaagcttctatgtatatatatttgtaactttttttgtctctcccattccttcaattt 3740721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 104
Target Start/End: Complemental strand, 21968700 - 21968658
Alignment:
Q  62 ttttttagggtgtttgataattgacaatatattaatatacatg 104  Q
    ||||||||||||||||| |||||||||||||||| | ||||||    
T  21968700 ttttttagggtgtttgacaattgacaatatattattttacatg 21968658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 104
Target Start/End: Complemental strand, 21991136 - 21991094
Alignment:
Q  62 ttttttagggtgtttgataattgacaatatattaatatacatg 104  Q
    ||||||||||||||||| |||||||||||||||| | ||||||    
T  21991136 ttttttagggtgtttgacaattgacaatatattattttacatg 21991094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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