View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10347_low_16 (Length: 319)
Name: NF10347_low_16
Description: NF10347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10347_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 17 - 308
Target Start/End: Complemental strand, 42634956 - 42634663
Alignment:
| Q |
17 |
aatttgctgccggccagagtcggcttggattacacactgcttgacaaaataaagtatagataagaaaacaacaaatgtagattaaatacaatagcttacc |
116 |
Q |
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| T |
42634956 |
aatttgctgccggccagagtcggcttggattacacactgcttgacaaaagaaagtatagataagaaaacaacaaatgtagattaaatacaatagcttacc |
42634857 |
T |
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| Q |
117 |
aacaaataatgagttaatagttcaacgttgacaacaaaattggactattgaattctttaaacattcaattttccattattattaggaacaaattcaattg |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
42634856 |
aacaaataatgagttaatagttcaacgttgacaacaaaattggactattgaattctttaaacattcaattttccattattattagtaacaaattcaattg |
42634757 |
T |
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| Q |
217 |
tgcaaccatacaaaagaaaagtgttgattccgtggggccattatac--nnnnnnnnatggttgattccgtgggccaatatacagaaagattctt |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
42634756 |
tgcaaccatacaaaagaaaagtgttgattccgtggggccactatacttttttttttatggttgattccgtgggccaatatacagaaagattctt |
42634663 |
T |
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