View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10347_low_19 (Length: 274)

Name: NF10347_low_19
Description: NF10347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10347_low_19
NF10347_low_19
[»] chr8 (2 HSPs)
chr8 (177-262)||(27059816-27059901)
chr8 (108-160)||(32329665-32329717)
[»] chr1 (2 HSPs)
chr1 (108-177)||(44682427-44682496)
chr1 (11-68)||(44682310-44682368)


Alignment Details
Target: chr8 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 177 - 262
Target Start/End: Original strand, 27059816 - 27059901
Alignment:
Q  177 ttgtggatattatggaggtgttagatctttgttaaacaaaatggggcgtcataaacctcttcggtgttttgggttggaattaggaa 262  Q
    ||||||||||| ||||||| ||||| || ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  27059816 ttgtggatattctggaggtattagaactgtgttaaacaaaatggggcgtcataaacgtcttcggtgttttgggttggaattaggaa 27059901  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 108 - 160
Target Start/End: Original strand, 32329665 - 32329717
Alignment:
Q  108 tttattatgacaagtgggagggtgtaggagaggggtataccacgtaagggtgt 160  Q
    |||||| ||||||||||||||||||| |||||||||| |||| ||||||||||    
T  32329665 tttattgtgacaagtgggagggtgtatgagaggggtacaccatgtaagggtgt 32329717  T

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Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 108 - 177
Target Start/End: Original strand, 44682427 - 44682496
Alignment:
Q  108 tttattatgacaagtgggagggtgtaggagaggggtataccacgtaagggtgtttacctatcaactctct 177  Q
    |||||| ||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||||    
T  44682427 tttattgtgacaagtgggagggtgtaagagaggggtacaccacgtaagggtgtttacctatcagctctct 44682496  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 11 - 68
Target Start/End: Original strand, 44682310 - 44682368
Alignment:
Q  11 atgaacgggtggttggataagtgacaaaggtt-aaagaaaactgaatgctgaatgagag 68  Q
    ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  44682310 atgaatgggtggttggataagtgacaaaggttgaaagaaaactgaatgctgaatgagag 44682368  T

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