View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10347_low_21 (Length: 260)
Name: NF10347_low_21
Description: NF10347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10347_low_21 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 18 - 247
Target Start/End: Complemental strand, 4846866 - 4846629
Alignment:
| Q |
18 |
catatgacatagtgataatcgaaaatctcctatttaaaaaagaatcaaatcattctggatgtctatataa--------ccatttaccatatatcaatgct |
109 |
Q |
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| T |
4846866 |
catataacatagtgataatcaaaaatctcctatttaaaaaagaatcaaatcattctggatgtctatataaaaccttcaccatttaccatatatcaatgct |
4846767 |
T |
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| Q |
110 |
ttttgatactattatcaattttccagatatcaactattatcaataatccatatataaatgtctttgtgtatatctattttgctttcaaatgattctttct |
209 |
Q |
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| T |
4846766 |
ttttgctactattatcaattttccagatatcaactattatcaataatccatatataaatgtctttgtgtatatctattttgctttcaaatgattctttct |
4846667 |
T |
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| Q |
210 |
atctgatttccattcatggcttaggtgatttttgcttt |
247 |
Q |
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| T |
4846666 |
atctgatttccattcatggcttaggtgatttttgcttt |
4846629 |
T |
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Target: chr5 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 164 - 260
Target Start/End: Original strand, 4079958 - 4080054
Alignment:
| Q |
164 |
taaatgtctttgtgtatatctattttgctttcaaatgattctttctatctgatttccattcatggcttaggtgatttttgcttttggttgcttttgc |
260 |
Q |
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| T |
4079958 |
taaatgtctttgtgtatatctactttgctttcaactgattctttctatctgatttccattcatggcttaggtgatttttgcttttggttgcttttgc |
4080054 |
T |
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