View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10347_low_24 (Length: 250)
Name: NF10347_low_24
Description: NF10347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10347_low_24 |
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Alignment Details
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 24 - 242
Target Start/End: Original strand, 39789684 - 39789902
Alignment:
| Q |
24 |
actcctactcatattcaaagtcttcatcttgaaacttgtcatgcactcaaacctctaccaccaccaaccacttcaatccaacatcatcatcatcataaca |
123 |
Q |
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| T |
39789684 |
actcctactcatattcaaagtcttcaccttgaaacttgtcatgcactcaaacctctaccaccaccaaccacttcaatacaacatcatcatcatcataaca |
39789783 |
T |
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| Q |
124 |
atcacagactctcatgcagttcttctccaatttcaccctccatttctgaccttgaaagtcaaaacaaagggtttagaagagttcaatctgaaggaaactt |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
39789784 |
atcacagactctcatgcagttcttctccaatttcaccctccatttctgaccttgaaagacaaaacaaagggtttagaagagttcaatctgaaggaaactt |
39789883 |
T |
|
| Q |
224 |
ggaagacttagcctatgct |
242 |
Q |
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||||||||||||||||||| |
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| T |
39789884 |
ggaagacttagcctatgct |
39789902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 111 - 241
Target Start/End: Complemental strand, 39411978 - 39411845
Alignment:
| Q |
111 |
catcatcataacaatcacagactctcatgcagttcttctccaatttcaccctccatttctgaccttgaaagtcaaaacaaagggt---ttagaagagttc |
207 |
Q |
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||||||||| ||||||||| ||||||||||| ||||||||||||||| || ||||||||||| |||||||| ||||||||||||| |||||||||||| |
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| T |
39411978 |
catcatcatcacaatcacaaactctcatgcacttcttctccaatttctccttccatttctgatcttgaaagacaaaacaaagggttgattagaagagttc |
39411879 |
T |
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| Q |
208 |
aatctgaaggaaacttggaagacttagcctatgc |
241 |
Q |
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|||||||||| ||||||||||||||||||||||| |
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| T |
39411878 |
aatctgaagggaacttggaagacttagcctatgc |
39411845 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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