View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10347_low_26 (Length: 248)

Name: NF10347_low_26
Description: NF10347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10347_low_26
NF10347_low_26
[»] chr2 (4 HSPs)
chr2 (1-106)||(30934587-30934691)
chr2 (11-107)||(40070659-40070756)
chr2 (38-107)||(28574778-28574847)
chr2 (21-107)||(6661131-6661217)
[»] chr8 (2 HSPs)
chr8 (9-107)||(28952141-28952240)
chr8 (8-53)||(15739809-15739854)
[»] chr5 (14 HSPs)
chr5 (22-107)||(22129032-22129117)
chr5 (24-106)||(23737554-23737636)
chr5 (22-107)||(5023608-5023693)
chr5 (120-160)||(11500434-11500474)
chr5 (120-160)||(11507820-11507860)
chr5 (120-160)||(11515192-11515232)
chr5 (120-160)||(11522593-11522633)
chr5 (120-160)||(11530006-11530046)
chr5 (120-160)||(11560888-11560928)
chr5 (120-158)||(11537409-11537447)
chr5 (61-107)||(19209487-19209533)
chr5 (11-69)||(19906393-19906451)
chr5 (22-107)||(34369715-34369811)
chr5 (8-107)||(15879608-15879707)
[»] chr7 (1 HSPs)
chr7 (22-107)||(22691023-22691108)
[»] chr4 (3 HSPs)
chr4 (22-107)||(7622189-7622274)
chr4 (11-107)||(34742410-34742506)
chr4 (8-107)||(10802652-10802751)
[»] chr1 (3 HSPs)
chr1 (45-107)||(22590390-22590452)
chr1 (10-107)||(19722163-19722260)
chr1 (35-107)||(9469462-9469534)
[»] chr6 (1 HSPs)
chr6 (30-104)||(19830980-19831054)
[»] scaffold1005 (1 HSPs)
scaffold1005 (120-160)||(1116-1156)
[»] scaffold0179 (2 HSPs)
scaffold0179 (15-107)||(11223-11315)
scaffold0179 (15-107)||(23800-23892)
[»] chr3 (2 HSPs)
chr3 (11-107)||(21530221-21530317)
chr3 (79-107)||(51885459-51885487)
[»] scaffold0029 (1 HSPs)
scaffold0029 (8-53)||(60481-60526)
[»] scaffold0014 (1 HSPs)
scaffold0014 (8-50)||(17949-17991)


Alignment Details
Target: chr2 (Bit Score: 62; Significance: 7e-27; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 30934691 - 30934587
Alignment:
Q  1 tccatttcaatttgccaggggtttccctggcatagctcctggcaaatttgccaaggattcttgctcctgacattattccctggcaatatgcaacatttct 100  Q
    |||||||||||||||||||| ||||||| ||||| ||||||| |||||||| | |  |||||||||||| ||||||||||||||||||||||||||||||    
T  30934691 tccatttcaatttgccaggg-tttccctcgcataactcctggtaaatttgctaggagttcttgctcctggcattattccctggcaatatgcaacatttct 30934593  T
Q  101 tgtagt 106  Q
    | ||||    
T  30934592 tatagt 30934587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 11 - 107
Target Start/End: Original strand, 40070659 - 40070756
Alignment:
Q  11 tttgccaggggtttccc-tggcatagctcctggcaaatttgccaaggattcttgctcctgacattattccctggcaatatgcaacatttcttgtagtg 107  Q
    ||||||||| ||||||| || ||||||| ||| | ||||| ||| |  |||||||||||| |||||||||||||| ||||||||||||||||||||||    
T  40070659 tttgccaggagtttcccctgacatagcttctgccgaattttccaggagttcttgctcctggcattattccctggccatatgcaacatttcttgtagtg 40070756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 107
Target Start/End: Complemental strand, 28574847 - 28574778
Alignment:
Q  38 cctggcaaatttgccaaggattcttgctcctgacattattccctggcaatatgcaacatttcttgtagtg 107  Q
    |||||||||||||||| |  |||||||||||  ||||||| | || ||||||||||||||||||||||||    
T  28574847 cctggcaaatttgccaggagttcttgctcctagcattatttcatgacaatatgcaacatttcttgtagtg 28574778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 107
Target Start/End: Original strand, 6661131 - 6661217
Alignment:
Q  21 gtttccctggcatagctcctggcaaatttgccaaggattcttgctcctgacattattccctggcaatatgcaacatttcttgtagtg 107  Q
    ||||||||||| |  |||||||||||||| ||| || ||| |||||||| ||| |||||||||| |  ||||  |||||||||||||    
T  6661131 gtttccctggctttactcctggcaaatttcccaggggttcatgctcctggcataattccctggctaattgcaggatttcttgtagtg 6661217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 9 - 107
Target Start/End: Complemental strand, 28952240 - 28952141
Alignment:
Q  9 aatttgccaggggttt-ccctggcatagctcctggcaaatttgccaaggattcttgctcctgacattattccctggcaatatgcaacatttcttgtagtg 107  Q
    ||||||||||| |||| ||||||||| ||||||||||||||||||| |  |||||||||||| ||||||||||||||||||| ||| |||||||||||||    
T  28952240 aatttgccaggagttttccctggcatggctcctggcaaatttgccaggagttcttgctcctggcattattccctggcaatatacaagatttcttgtagtg 28952141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 53
Target Start/End: Complemental strand, 15739854 - 15739809
Alignment:
Q  8 caatttgccaggggtttccctggcatagctcctggcaaatttgcca 53  Q
    ||||||||||||||||||||||||||  ||||||||||||||||||    
T  15739854 caatttgccaggggtttccctggcattactcctggcaaatttgcca 15739809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 22 - 107
Target Start/End: Original strand, 22129032 - 22129117
Alignment:
Q  22 tttccctggcatagctcctggcaaatttgccaaggattcttgctcctgacattattccctggcaatatgcaacatttcttgtagtg 107  Q
    |||||||||||| ||||||||||||||||||| |  |||||||||||| ||||||||||||||||||| ||| |||||||||||||    
T  22129032 tttccctggcatggctcctggcaaatttgccaggagttcttgctcctggcattattccctggcaatatacaagatttcttgtagtg 22129117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 24 - 106
Target Start/End: Complemental strand, 23737636 - 23737554
Alignment:
Q  24 tccctggcatagctcctggcaaatttgccaaggattcttgctcctgacattattccctggcaatatgcaacatttcttgtagt 106  Q
    |||||||||| ||||||||||||||||||| |  |||||||||||| |||| |||||||||||||||||| ||||||||||||    
T  23737636 tccctggcattgctcctggcaaatttgccaggagttcttgctcctggcattgttccctggcaatatgcaagatttcttgtagt 23737554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 22 - 107
Target Start/End: Original strand, 5023608 - 5023693
Alignment:
Q  22 tttccctggcatagctcctggcaaatttgccaaggattcttgctcctgacattattccctggcaatatgcaacatttcttgtagtg 107  Q
    |||||||||||| ||||||||||||||| ||| |  ||||||||| || |||||||||||| |||||| ||| |||||||||||||    
T  5023608 tttccctggcatggctcctggcaaattttccaggagttcttgctcttggcattattccctgacaatatacaagatttcttgtagtg 5023693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 120 - 160
Target Start/End: Complemental strand, 11500474 - 11500434
Alignment:
Q  120 tttgttgaccttaatttctctggtaaataggataggactta 160  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  11500474 tttgttgaccttaatttctctggtaaataggataggactta 11500434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 120 - 160
Target Start/End: Complemental strand, 11507860 - 11507820
Alignment:
Q  120 tttgttgaccttaatttctctggtaaataggataggactta 160  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  11507860 tttgttgaccttaatttctctggtaaataggataggactta 11507820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 120 - 160
Target Start/End: Complemental strand, 11515232 - 11515192
Alignment:
Q  120 tttgttgaccttaatttctctggtaaataggataggactta 160  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  11515232 tttgttgaccttaatttctctggtaaataggataggactta 11515192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 120 - 160
Target Start/End: Complemental strand, 11522633 - 11522593
Alignment:
Q  120 tttgttgaccttaatttctctggtaaataggataggactta 160  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  11522633 tttgttgaccttaatttctctggtaaataggataggactta 11522593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 120 - 160
Target Start/End: Complemental strand, 11530046 - 11530006
Alignment:
Q  120 tttgttgaccttaatttctctggtaaataggataggactta 160  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  11530046 tttgttgaccttaatttctctggtaaataggataggactta 11530006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 120 - 160
Target Start/End: Complemental strand, 11560928 - 11560888
Alignment:
Q  120 tttgttgaccttaatttctctggtaaataggataggactta 160  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  11560928 tttgttgaccttaatttctctggtaaataggataggactta 11560888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 120 - 158
Target Start/End: Complemental strand, 11537447 - 11537409
Alignment:
Q  120 tttgttgaccttaatttctctggtaaataggataggact 158  Q
    |||||||||||||||||||||||||||||||||||||||    
T  11537447 tttgttgaccttaatttctctggtaaataggataggact 11537409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 61 - 107
Target Start/End: Original strand, 19209487 - 19209533
Alignment:
Q  61 ttgctcctgacattattccctggcaatatgcaacatttcttgtagtg 107  Q
    ||||||||| |||| |||||||||||||||||| |||||||||||||    
T  19209487 ttgctcctggcattgttccctggcaatatgcaagatttcttgtagtg 19209533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 11 - 69
Target Start/End: Complemental strand, 19906451 - 19906393
Alignment:
Q  11 tttgccaggggtttccctggcatagctcctggcaaatttgccaaggattcttgctcctg 69  Q
    |||||||||||  |||||||||| ||||||||||||||||||| |  ||||||||||||    
T  19906451 tttgccaggggcatccctggcattgctcctggcaaatttgccaggagttcttgctcctg 19906393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 107
Target Start/End: Complemental strand, 34369811 - 34369715
Alignment:
Q  22 tttccctggcatagctcctggcaaatttgcca----------agga-ttcttgctcctgacattattccctggcaatatgcaacatttcttgtagtg 107  Q
    ||||||||||||||||||||||||||||||||          |||| |||||||||||| |||| ||||||| |||||| ||| |||||||||||||    
T  34369811 tttccctggcatagctcctggcaaatttgccaggagtttgccaggagttcttgctcctggcattgttccctgacaatatacaagatttcttgtagtg 34369715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 107
Target Start/End: Complemental strand, 15879707 - 15879608
Alignment:
Q  8 caatttgccaggggtttccctggcatagctcctggcaaatttgccaaggattcttgctcctgacattattccctggcaatatgcaacatttcttgtagtg 107  Q
    ||||||||||||||||||||||||||  ||||||  |  ||| ||| |   |  |||||||||||||||||||||| || | |||| |||||||||||||    
T  15879707 caatttgccaggggtttccctggcattactcctgaaattttttccaggagctgatgctcctgacattattccctggaaaaacgcaagatttcttgtagtg 15879608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 22 - 107
Target Start/End: Original strand, 22691023 - 22691108
Alignment:
Q  22 tttccctggcatagctcctggcaaatttgccaaggattcttgctcctgacattattccctggcaatatgcaacatttcttgtagtg 107  Q
    |||| |||||||||||||||| ||||||| ||    |||||||||||| |||||||||||||||||||||||||||||||||||||    
T  22691023 tttctctggcatagctcctggaaaatttgacagcagttcttgctcctggcattattccctggcaatatgcaacatttcttgtagtg 22691108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 22 - 107
Target Start/End: Complemental strand, 7622274 - 7622189
Alignment:
Q  22 tttccctggcatagctcctggcaaatttgccaaggattcttgctcctgacattattccctggcaatatgcaacatttcttgtagtg 107  Q
    |||||||||||||||||||||||||||||||| |  || ||||||||| |||| |||||||||||||  ||| |||||||||||||    
T  7622274 tttccctggcatagctcctggcaaatttgccaggagtttttgctcctggcatttttccctggcaatacacaagatttcttgtagtg 7622189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 11 - 107
Target Start/End: Complemental strand, 34742506 - 34742410
Alignment:
Q  11 tttgccaggggtttccctggcatagctcctggcaaatttgccaaggattcttgctcctgacattattccctggcaatatgcaacatttcttgtagtg 107  Q
    |||||||||||||||| ||||||||  |||||||||||||||| || ||  |||||||| ||| ||| |||||||| |||||  |||||||||||||    
T  34742506 tttgccaggggtttccttggcatagtccctggcaaatttgccaggggttgatgctcctggcataatttcctggcaaaatgcaggatttcttgtagtg 34742410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 8 - 107
Target Start/End: Original strand, 10802652 - 10802751
Alignment:
Q  8 caatttgccaggggtttccctggcatagctcctggcaaatttgccaaggattcttgctcctgacattattccctggcaatatgcaacatttcttgtagtg 107  Q
    |||||||||||| || ||||||||||  |||||| ||||||||||| |   |  |||||| |||||||||||||||||| | ||||| ||||||||||||    
T  10802652 caatttgccaggagtgtccctggcattactcctgacaaatttgccaggagctgatgctcccgacattattccctggcaaaacgcaacttttcttgtagtg 10802751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 45 - 107
Target Start/End: Original strand, 22590390 - 22590452
Alignment:
Q  45 aatttgccaaggattcttgctcctgacattattccctggcaatatgcaacatttcttgtagtg 107  Q
    ||||||||| ||||||||||||||| ||||||| ||||||||||||||| |||||||||||||    
T  22590390 aatttgccagggattcttgctcctggcattatttcctggcaatatgcaatatttcttgtagtg 22590452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 10 - 107
Target Start/End: Original strand, 19722163 - 19722260
Alignment:
Q  10 atttgccaggggtttccctggcatagctcctggcaaatttgccaag-gattcttgctcctgacattattccctggcaatatgcaacatttcttgtagtg 107  Q
    ||||||||||||||||||||||||  ||||||| |||||||||| | |  ||  ||||||||||||| ||||||||||   ||||| ||||||||||||    
T  19722163 atttgccaggggtttccctggcattactcctggtaaatttgccaggagcatc-agctcctgacattaatccctggcaaatcgcaacttttcttgtagtg 19722260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 107
Target Start/End: Complemental strand, 9469534 - 9469462
Alignment:
Q  35 gctcctggcaaatttgccaaggattcttgctcctgacattattccctggcaatatgcaacatttcttgtagtg 107  Q
    ||||||||||||||||||| |  ||| |||||||  ||| ||||| ||| || ||||||||||||||||||||    
T  9469534 gctcctggcaaatttgccaggagttcatgctcctagcataattccgtggtaaaatgcaacatttcttgtagtg 9469462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 30 - 104
Target Start/End: Original strand, 19830980 - 19831054
Alignment:
Q  30 gcatagctcctggcaaatttgccaaggattcttgctcctgacattattccctggcaatatgcaacatttcttgta 104  Q
    |||||||||||||||||||| ||| |  |||||||||||| |||| ||||||||||||||| || ||||||||||    
T  19830980 gcatagctcctggcaaattttccaggagttcttgctcctggcattgttccctggcaatatgaaagatttcttgta 19831054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1005 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold1005
Description:

Target: scaffold1005; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 120 - 160
Target Start/End: Complemental strand, 1156 - 1116
Alignment:
Q  120 tttgttgaccttaatttctctggtaaataggataggactta 160  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  1156 tttgttgaccttaatttctctggtaaataggataggactta 1116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0179 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0179
Description:

Target: scaffold0179; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 107
Target Start/End: Complemental strand, 11315 - 11223
Alignment:
Q  15 ccaggggtttccctggcatagctcctggcaaatttgccaaggattcttgctcctgacattattccctggcaatatgcaacatttcttgtagtg 107  Q
    |||||||  |||||||||| |||||||||||||||||||||  |||||||||||| |||  ||||||||| |  |||| | ||||||||||||    
T  11315 ccaggggcatccctggcattgctcctggcaaatttgccaagagttcttgctcctggcatagttccctggctaattgcatcttttcttgtagtg 11223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0179; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 107
Target Start/End: Original strand, 23800 - 23892
Alignment:
Q  15 ccaggggtttccctggcatagctcctggcaaatttgccaaggattcttgctcctgacattattccctggcaatatgcaacatttcttgtagtg 107  Q
    |||||||  |||||||||| ||||||||||||||||||| |  |||||||||||| |||  ||||||| | |  |||| | ||||||||||||    
T  23800 ccaggggcatccctggcattgctcctggcaaatttgccaggagttcttgctcctggcatagttccctgactaattgcatcttttcttgtagtg 23892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 107
Target Start/End: Complemental strand, 21530317 - 21530221
Alignment:
Q  11 tttgccaggggtttccctggcatagctcctggcaaatttgccaaggattcttgctcctgacattattccctggcaatatgcaacatttcttgtagtg 107  Q
    |||||||||||||||| ||||||||  |||||||||||||||| |  ||  |||||||| ||| ||| |||||||| |||||  |||||||||||||    
T  21530317 tttgccaggggtttccttggcatagtccctggcaaatttgccaggagttgatgctcctggcataatttcctggcaaaatgcaggatttcttgtagtg 21530221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 107
Target Start/End: Original strand, 51885459 - 51885487
Alignment:
Q  79 cctggcaatatgcaacatttcttgtagtg 107  Q
    |||||||||||||||||||||||||||||    
T  51885459 cctggcaatatgcaacatttcttgtagtg 51885487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 53
Target Start/End: Original strand, 60481 - 60526
Alignment:
Q  8 caatttgccaggggtttccctggcatagctcctggcaaatttgcca 53  Q
    ||||||||||||||||||||||||||  ||||| ||||||||||||    
T  60481 caatttgccaggggtttccctggcattactcctagcaaatttgcca 60526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 50
Target Start/End: Complemental strand, 17991 - 17949
Alignment:
Q  8 caatttgccaggggtttccctggcatagctcctggcaaatttg 50  Q
    ||||||| ||||||||||||||||||  |||||||||||||||    
T  17991 caatttgtcaggggtttccctggcattactcctggcaaatttg 17949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University