View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10347_low_27 (Length: 247)
Name: NF10347_low_27
Description: NF10347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10347_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 54276838 - 54277055
Alignment:
| Q |
1 |
tttctttctcattgtgatgatgactcatgattgctatgctctgtaggttttgttttgggaaagaaaaattcggccaaaaaatccgatgaaagctctaatt |
100 |
Q |
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| T |
54276838 |
tttctttctcattgtgatgatgactcatgattgctatgctctgtaggttttgttttgggaaagaaaaattcggt------------tgaaagctctaatt |
54276925 |
T |
|
| Q |
101 |
cgtgggagactagtgcgacgtttaatgatatcacgtattggaaccacgacagcgttccttcaaacaatgatgatttttcccgtgcttttcattggatccc |
200 |
Q |
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||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54276926 |
cgtgggagactagtgtgacctttaatgatatcacgtattggaaccacgacagcgttccttcaaacaatgatgatttttcccgtgcttttcattggatccc |
54277025 |
T |
|
| Q |
201 |
tgttgcagaagctgtaagttgtctctagct |
230 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
54277026 |
tgttgcagaagctgtaagttgtctctagct |
54277055 |
T |
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