View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10347_low_28 (Length: 245)
Name: NF10347_low_28
Description: NF10347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10347_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 108; Significance: 2e-54; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 19 - 146
Target Start/End: Complemental strand, 1546338 - 1546211
Alignment:
| Q |
19 |
gatggaaagacgaacaaaaagaagaaactctctcagctcttcttccattcaaacaagaagcaaaacaaggagggttgcaacatattatgatttttacttt |
118 |
Q |
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| T |
1546338 |
gatggaaagacgaacaagaagaagaaactctctcagctcttgttccattcaaacaagaagcaaaacaaggaggcttgcaacatattttgatttttacttt |
1546239 |
T |
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| Q |
119 |
cccgacgagtgttgggaatttgtcttca |
146 |
Q |
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| T |
1546238 |
ctcgacgagtgttgggaatttgtcttca |
1546211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 141 - 243
Target Start/End: Complemental strand, 1546071 - 1545969
Alignment:
| Q |
141 |
tcttcattgcctcctcaaaaggttcaccagcctcacctcccttaacctcacgccctctagtggtgacctcaacaagcttctctaccaaatctctgcttct |
240 |
Q |
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| T |
1546071 |
tcttcattgcctcctcaaaaggttcaccagcctcacctcccttaacctcacgccctctagtggtgacctcaacaagcttctctaccaaatctctactttt |
1545972 |
T |
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| Q |
241 |
cca |
243 |
Q |
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||| |
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| T |
1545971 |
cca |
1545969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 57 - 146
Target Start/End: Complemental strand, 554189 - 554106
Alignment:
| Q |
57 |
cttcttccattcaaacaagaagcaaaacaaggagggttgcaacatattatgatttttactttcccgacgagtgttgggaatttgtcttca |
146 |
Q |
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| T |
554189 |
cttcttccattcaaacaagaagcaaaacaaggagtcttgtaa------ttgatttttactttcctgatgaatgttgggaatttgtcttca |
554106 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 189
Target Start/End: Complemental strand, 7132507 - 7132467
Alignment:
| Q |
149 |
gcctcctcaaaaggttcaccagcctcacctcccttaacctc |
189 |
Q |
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| T |
7132507 |
gcctcctcaaaaggttcaccaacctcaactcccttgacctc |
7132467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 189
Target Start/End: Complemental strand, 7135430 - 7135390
Alignment:
| Q |
149 |
gcctcctcaaaaggttcaccagcctcacctcccttaacctc |
189 |
Q |
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| T |
7135430 |
gcctcctcaaaaggttcaccaacctcaactcccttgacctc |
7135390 |
T |
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