View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10347_low_29 (Length: 243)
Name: NF10347_low_29
Description: NF10347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10347_low_29 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 8 - 230
Target Start/End: Complemental strand, 11101058 - 11100838
Alignment:
| Q |
8 |
aagcagagaaggctttagggttcaacgaacattttcgaagagatcttcatttaattctcttcaaagaataaatatttacaaaaggatgttcatttacttc |
107 |
Q |
| |
|
||||||||||| ||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |||| |||||||| ||| ||| |
|
|
| T |
11101058 |
aagcagagaagactttaaggttcaacgaacattttcgaagagatgttcatttagttctcttcaaagaataaatatttataaaaagatgttcaattatttc |
11100959 |
T |
|
| Q |
108 |
tctccaaagacattaacatatctcaaactctaaaattctaaaactaaaatctannnnnnnnatcgttagatcaaaccctttaagtttaaagaatcactga |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || |
|
|
| T |
11100958 |
tctccaaagacattaacatatctcaaactctaaaattctaaaactaaaatcta-tttttttatcgttagatcaaaccctttaagtttaaagaatcaccga |
11100860 |
T |
|
| Q |
208 |
tcttaccaccttaatacaaaatt |
230 |
Q |
| |
|
||||| ||||||||||||||||| |
|
|
| T |
11100859 |
tctta-caccttaatacaaaatt |
11100838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University