View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10347_low_3 (Length: 498)
Name: NF10347_low_3
Description: NF10347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10347_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 27 - 399
Target Start/End: Complemental strand, 2901508 - 2901141
Alignment:
| Q |
27 |
tatacagttttcctttgattttaaatgagatctctcacaattgaacagtggaattggacctctcaaattagtcagttctataccaccattactgatttat |
126 |
Q |
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| T |
2901508 |
tatacagttttgctttgactttaaacgagatctctcacaagtggacagtggaattgaacctctcaaattagtcagttc------accattactggtttac |
2901415 |
T |
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| Q |
127 |
cgtcgtcgaaacacnnnnnnnatcaccacaatgagtatggaacgataccaccaacatatttgtgttccttgtgtcctcctcctctttcatttttgatctc |
226 |
Q |
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| T |
2901414 |
catcgtcgaaatactttttttatgaccaaaatgagtatggcacgacaccaccaccatatttgtgttccttgtgtcttcctcctctatcattttttatctc |
2901315 |
T |
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| Q |
227 |
aatcacaactagaaagtcatgcttctctcaataaaaa-gtcacattgtcgccttgaaatcgaaattccacccaccttatacacatattgtgaaatttgag |
325 |
Q |
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| T |
2901314 |
aatcacaacttgaaagtcatgcttctcttaataaaaaagtcacattgtcgccttgaaatcgaaattccacccaccttatacacatattgtgaaatttgag |
2901215 |
T |
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| Q |
326 |
accaaatttgggctcctctaagtgtcttctttcattacctaaacttagaatcacaaatctctacatttcaaaaa |
399 |
Q |
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| T |
2901214 |
accaaatttgggctcctctaagtgtcttctttcattacctaaacttagaatcacatatctctgcatttcaaaaa |
2901141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 403 - 486
Target Start/End: Complemental strand, 2900782 - 2900695
Alignment:
| Q |
403 |
tcgcaaatactgccaaagctctctattcc----ctccttttcaaacggagttcctccattactccttcgcacttcttcttgttcttct |
486 |
Q |
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| T |
2900782 |
tcgcaaatactgccaaagctctctaatccattactccttttcaaaccgagttcctccatcactccttcgcacttcttcttgttcttct |
2900695 |
T |
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