View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10347_low_30 (Length: 242)
Name: NF10347_low_30
Description: NF10347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10347_low_30 |
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Alignment Details
Target: chr1 (Bit Score: 158; Significance: 3e-84; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 27415887 - 27416112
Alignment:
| Q |
1 |
cgaaatcagtggacgttccttctccattggcttatcgattttgggcccgaa-ccggatgctcaaacaacaacggaaattttatttgtgccacaggtgatt |
99 |
Q |
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| T |
27415887 |
cgaaatcagtggaccttccttatccattggcttatcaattttgggcccgaaaccggatgctcaaacaataacggaaattttagttgtgccacaggtgatt |
27415986 |
T |
|
| Q |
100 |
gtgggtctggtcaagttgagtgcaatggtggtggcgtaactacaccagcaacttcggttgacattgaagtggcatcaaatggaggacaagatttatacgt |
199 |
Q |
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| T |
27415987 |
gtgggtctggtcaagttgagtgcaatggtgctgacgtaattacaccagcaacattggttgacattaaagtggcatcaaatggaggacaagatttatacag |
27416086 |
T |
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| Q |
200 |
tgtgatcaacgcttatgggttcaatg |
225 |
Q |
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||||| |||| ||||||||||||||| |
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| T |
27416087 |
tgtgagcaacacttatgggttcaatg |
27416112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 35 - 210
Target Start/End: Complemental strand, 27389183 - 27389008
Alignment:
| Q |
35 |
tcgattttgggcccgaaccggatgctcaaacaacaacggaaattttatttgtgccacaggtgattgtgggtctggtcaagttgagtgcaatggtggtggc |
134 |
Q |
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| T |
27389183 |
tcgattttgggcccgaaccggatgctcaaccaacaacggacagtttacttgtgccactgccgattgtgcatctggtcaagttgcatgcaatggtgctggc |
27389084 |
T |
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| Q |
135 |
gtaactacaccagcaacttcggttgacattgaagtggcatcaaatggaggacaagatttatacgttgtgatcaacg |
210 |
Q |
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| T |
27389083 |
gcaatcccaccagcaactttggttgaaattacagtggcatcaaatggaggacaagatttctacgatgtgagcaacg |
27389008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 35 - 223
Target Start/End: Complemental strand, 27410139 - 27409951
Alignment:
| Q |
35 |
tcgattttgggcccgaaccggatgctcaaacaacaacggaaattttatttgtgccacaggtgattgtgggtctggtcaagttgagtgcaatggtggtggc |
134 |
Q |
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| T |
27410139 |
tcgattttgggcaagaaccggatgctcaatcaacaaagaaaagtttagttgtgccacagccgattgtgggtctggtcaagtggggtgcaatggtgctggc |
27410040 |
T |
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| Q |
135 |
gtaactacaccagcaacttcggttgacattgaagtggcatcaaatggaggacaagatttatacgttgtgatcaacgcttatgggttcaa |
223 |
Q |
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| T |
27410039 |
gcaatcccaccagcaactttagttgaaattaccatggcatcaaatggaggacaagatttctacgatgtgagcaacgttgacgggttcaa |
27409951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 115
Target Start/End: Complemental strand, 27432969 - 27432889
Alignment:
| Q |
35 |
tcgattttgggcccgaaccggatgctcaaacaacaacggaaattttatttgtgccacaggtgattgtgggtctggtcaagt |
115 |
Q |
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| T |
27432969 |
tcgattttggggacgaaccggatgctccaacaacaatggaaagttcagttgtgccaccgccgattgtgcctctggtcaagt |
27432889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 135
Target Start/End: Complemental strand, 27215289 - 27215160
Alignment:
| Q |
6 |
tcagtggacgttccttctccattggcttatcgattttgggcccgaaccggatgctcaaacaacaacggaaattttatttgtgccacaggtgattgtgggt |
105 |
Q |
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||||||||| |||| || |||| | || ||||||||||| |||||||||||||| |||||||| ||||| || | |||||||| | ||||||| | |
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| T |
27215289 |
tcagtggaccttccatcaccatggtctggtcgattttggggccgaaccggatgcttcaacaacaatggaaagttcagctgtgccaccgccgattgtgcct |
27215190 |
T |
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| Q |
106 |
ctggtcaagttgagtgcaatggtggtggcg |
135 |
Q |
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| T |
27215189 |
ctggtcaactcggttgcaatggtgctggcg |
27215160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 135
Target Start/End: Original strand, 27443612 - 27443741
Alignment:
| Q |
6 |
tcagtggacgttccttctccattggcttatcgattttgggcccgaaccggatgctcaaacaacaacggaaattttatttgtgccacaggtgattgtgggt |
105 |
Q |
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||||||||| |||| || |||| | || ||||||||||| |||||||||||||| |||||||| ||||| || | |||||||| | ||||||| | |
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| T |
27443612 |
tcagtggaccttccatcaccatggtctggtcgattttggggccgaaccggatgcttcaacaacaatggaaagttcagctgtgccaccgccgattgtgcct |
27443711 |
T |
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| Q |
106 |
ctggtcaagttgagtgcaatggtggtggcg |
135 |
Q |
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| T |
27443712 |
ctggtcaactcggttgcaatggtgctggcg |
27443741 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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