View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10347_low_31 (Length: 242)
Name: NF10347_low_31
Description: NF10347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10347_low_31 |
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Alignment Details
Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 45141769 - 45141543
Alignment:
| Q |
1 |
tttctctccaccatgaaacgtgcagcgtgcttgatagctgcgagtgatccacgaacattaatggccatggtgttgtcaaattcattcagatcaaattcta |
100 |
Q |
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| T |
45141769 |
tttctctccaccatgaaacgtgcagcgtgcttgatagctgcgagtgatccacgaacattaatggccatggtgttgtcaaattcattcagatcaaattcta |
45141670 |
T |
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| Q |
101 |
gtatgctgctagacataccaccttcaattccagcgttgctaaacataatgtctagggttccatatttttccaatgcgaaagctactgtttcttcaacttg |
200 |
Q |
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| T |
45141669 |
gtatgctgctagacataccaccttcaattccagcgttgctaaacataatgtctagggttccatatttttccaatgcgaaagctactgtttcttcaacttg |
45141570 |
T |
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| Q |
201 |
tttttcatctctcacatcacaatggtg |
227 |
Q |
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| T |
45141569 |
tttttcatctctcacatcacaatggtg |
45141543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 45152414 - 45152186
Alignment:
| Q |
1 |
tttctctccaccatgaaacgtgcagcgtgcttgatagctgcgagtgatccacgaacattaatggccatggtgttgtcaaattcattcagatcaaattcta |
100 |
Q |
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| T |
45152414 |
tttctttccaccataacacgcgcagcgtgcttgatagttgtagctgatccacgaacattaatggccatggtgttgtcaaattcatttacatcat----ta |
45152319 |
T |
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| Q |
101 |
gtatgctgctagacatacca------ccttcaattccagcgttgctaaacataatgtctagggttccatatttttccaatgcgaaagctactgtttcttc |
194 |
Q |
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| T |
45152318 |
gtatgctgatagacatagcagtagcacctccaattccagcattgctgaacatgatgtctaaggttccatatttttccaatgcaaaagctacggtttcctc |
45152219 |
T |
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| Q |
195 |
aacttgtttttcatctctcacatcacaatggtg |
227 |
Q |
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| T |
45152218 |
aacttgtttttcatcactcacatcacaatggtg |
45152186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 64 - 227
Target Start/End: Complemental strand, 38256170 - 38256010
Alignment:
| Q |
64 |
gccatggtgttgtcaaattcattcagatcaaattctagtatgctgctagacataccaccttcaattccagcgttgctaaacataatgtctagggttccat |
163 |
Q |
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||||||||||||||||||||||| || | ||||||||||| ||||||| | | ||| | | ||||| ||||| ||||| ||||||| ||| |||| |
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| T |
38256170 |
gccatggtgttgtcaaattcatttaggttaaattctagta---tgctagataaaggaccagcgttaccagcattgctgaacatgatgtctaaggtaccat |
38256074 |
T |
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| Q |
164 |
atttttccaatgcgaaagctactgtttcttcaacttgtttttcatctctcacatcacaatggtg |
227 |
Q |
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|| | ||||| | |||||| || |||| ||||||||||| || |||||||| ||||| ||||| |
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| T |
38256073 |
atctctccaacgtgaaagcaacaatttcctcaacttgtttctcctctctcacgtcacagtggtg |
38256010 |
T |
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