View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10347_low_32 (Length: 241)
Name: NF10347_low_32
Description: NF10347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10347_low_32 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 89; Significance: 5e-43; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 153 - 241
Target Start/End: Complemental strand, 14457792 - 14457704
Alignment:
| Q |
153 |
atgttgtagtttaactgcactgtaaaattctactactcagctgtaagatataagagagataaattctaaactcatatccaattcaaatc |
241 |
Q |
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| T |
14457792 |
atgttgtagtttaactgcactgtaaaattctactactcagctgtaagatataagagagataaattctaaactcatatccaattcaaatc |
14457704 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 21 - 112
Target Start/End: Complemental strand, 14457890 - 14457799
Alignment:
| Q |
21 |
acgagcaagaagaggaggtgaatgtaagattcaccatgcacacaacaaactgatgaaaagccaatgttgtagtttgattttctttttattat |
112 |
Q |
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| T |
14457890 |
acgagcaagaagaggaggcgaatgtaagattcaccatgcacacaacaagctgatggaaagccaatgttgtagtttgattttctttttattat |
14457799 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 24 - 148
Target Start/End: Complemental strand, 14466760 - 14466638
Alignment:
| Q |
24 |
agcaagaagaggaggtgaatgtaagattcaccatgcacacaacaaactgatgaaaagccaatgttgtagtttgattttctttttattatcatgattacaa |
123 |
Q |
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| T |
14466760 |
agcaacaagaggaggcga-tgtaagattcaccgtgcacacaacaagctgatgaaa-gccaatgttgcagtttgattttctttttatcatcatgattacag |
14466663 |
T |
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| Q |
124 |
atgttttttaggattgtatatttat |
148 |
Q |
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| T |
14466662 |
atgtttttaaggattgtgtatttat |
14466638 |
T |
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