View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10347_low_34 (Length: 241)
Name: NF10347_low_34
Description: NF10347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10347_low_34 |
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Alignment Details
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 27065151 - 27065371
Alignment:
| Q |
1 |
tcacattcaatccaaacatgcacacattaagttgataaataatacataatacattttcttgaaaccgaaaaaccatttatttctaaacatggaaacaaaa |
100 |
Q |
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| T |
27065151 |
tcacattcaatccaaacatgcacacattaagttgataaataatacatagtacattttcttgaaacggaaaaaccatttatttctaaacatagaaacaaaa |
27065250 |
T |
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| Q |
101 |
aactacctacttgacacaacatagaaataaaaacatatagacttcagagtggagatgctactttagtcggcagagctccaagtcatgtcattctcaaaga |
200 |
Q |
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| T |
27065251 |
aactacttacttgacacgacatagaaataaaaacatattgacttcagagtggagatgctactttagtcggcagagctccaagtcatgtcattctcaaaga |
27065350 |
T |
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| Q |
201 |
tccaatgacacacttcgatct |
221 |
Q |
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| T |
27065351 |
tccaatgacacacttcgatct |
27065371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 149 - 221
Target Start/End: Original strand, 27079016 - 27079088
Alignment:
| Q |
149 |
gtggagatgctactttagtcggcagagctccaagtcatgtcattctcaaagatccaatgacacacttcgatct |
221 |
Q |
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| T |
27079016 |
gtggaaatgctgctttagtcggtagtagtccaggtcatgtcattctcaaagatccaatgacacacttcaatct |
27079088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 221
Target Start/End: Original strand, 27052885 - 27052929
Alignment:
| Q |
177 |
tccaagtcatgtcattctcaaagatccaatgacacacttcgatct |
221 |
Q |
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| T |
27052885 |
tccatgtcatatcattctcaaatatccaatgacacacttcaatct |
27052929 |
T |
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